Gene detail information of Glyur000198s00008749 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62520.1 | 2.00E-48 | similar to RCD one 5 |
| NR | XP_004508868.1 | 3.45E-172 | PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5-like [Cicer arietinum] |
| Swissprot | tr|Q9FJJ3|SRO5_ARATH | 9.00E-57 | Probable inactive poly [ADP-ribose] polymerase SRO5 |
| trEMBL | tr|I1MTH3|I1MTH3_SOYBN | 5.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G09720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00198 | 147363 | 150563 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000198s00008749.1 | PF12174.3 | RST | 239 | 305 | 4.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.936 |
| SRR1783600 | control | 1.934 |
| SRR1783602 | moderate drought stress | 2.008 |
| SRR1811619 | moderate drought stress | 2.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.704 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.709 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.949 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.408 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.771 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.340 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.463 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.068 |
| SRR2868004 | Drought Stress (root) | 15.372 |
| SRR2967015 | Control (root) | 9.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.428 |
| SRR9715740 | Leaf | 10.049 |
| SRR9715741 | Leaf | 13.930 |
| SRR9715739 | Root | 5.807 |
| SRR9715742 | Root | 8.876 |
| SRR9715743 | Root | 7.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.053 |
| SRR8749028 | MeJA induced 9h | 41.418 |
| SRR8749029 | MeJA induced 9h | 53.547 |
| SRR8749030 | Uninduced | 30.040 |
| SRR8749031 | Uninduced | 61.803 |
| SRR8749032 | Uninduced | 49.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.165 |
| SRR8400027 | Control - Root | 6.119 |