Gene detail

Gene detail information of Glyur000198s00008746.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32180.1	0	pantothenate kinase 2
NR	XP_006600640.1	0	PREDICTED: pantothenate kinase 2-like isoform X2 [Glycine max]
COG	YP_005445654.1	6.00E-50	hypothetical protein PSMK_15980 [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|Q8L5Y9\|PANK2_ARATH	0	Pantothenate kinase 2
trEMBL	tr\|K7MKQ2\|K7MKQ2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G09700.2}

Sequence

Transcript Sequence

>Glyur000198s00008746.1
TTCAATTCNAAGTTCAAACACTTGAATAGTTTGTACACAGCGGAGCTGGTGGGTGGGTGGGACTAAAGTGTCAAAGTGATTGGAGTTGACCTTGTGAAAAATTAAAAGGAGTAGGAGTCAGGAAACTGAGCTGAGGGGGAAGAACAAACAAGAGAAGAGGGCAGAGTAGAGAAGAGAAGAGAGATATCATATGGCAGGCAACAACAGTTCAATTCACAGGTCGAGTTCACGGCCTCAGCTGGATCTCAGCAAAGCAGAAATTCAAGGAAACGTAGAGGACAGGGACCCCACTATTTTGTTACCCAATCAATCTCATGATATATCTCACCTCTCTCTCGACATTGGAGGTTCTCTGATAAAGTTGGTATACTTTTCAAGACACGAAGACCAATCGACCAATGATGAAAGGATGAAAAGTGTGAAGGATCGACTGGGAATTCCCAATGGTAGCAGCAGGAGAAGCTATCCTATTCTTGGTGGGAGGCTTCATTTTGTGAAGTTCGAGACAAACAAGATTAATGAGTGCTTGGAATTCATCAATTCAAAGCAGCTTCACCGTAGTGTTTGGGAATCACATTANTCTGATGCTGTGGCTGATCCCAATGCCATCATTAAGGCCACTGGTGGTGGAGCATACAAATTCGCTGATCTTTTTAAAGAGAGACTTGGACTTAGCCTTGACAAAGAAGATGAAATGGGTTGTCTTGTAGCCGGAGCAAATTTCTTACTTAAGGCAATCCGTCATGAAGCTTTTACACACATGGAGGGCCAGAAAGAGTTTGTTCAAATTGACCCAAATGATTTGTTTCCTTATCTTCTCGTTAATATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGAAAATTTGAGAGGATTAGTGGGACAAATGTCGGTGGTGGTACTTACTGGGGCTTGGGAAGGCTGTTAACAAAGTGTGAGAGCTTTGATGAGTTACTTGAGCTGAGTCAGAAAGGAGATAATAGAAACACTGACATGCTTGTTGGGGACATTTATGGGGGTATGGACTATTCTAAGATTGGCCTATCGGCTTCTACCATTGCTTCAAGTTTTGGCAAGGCAACATTAGAAAAAAAGGAGCTTGAAGATTACAGACCTGAAGATATATCACTCTCGCTTCTACGAATGATTTCATACAATATTGGCCAGATATCTTACTTGAATGCACTGCGATTTGGGTTGAAGCGTATCTTTTTTGGAGGATTTTTTATAAGGGGCCATGCCTATACCATGGACGCTATTTCTTTTGCAATTAATTTCTGGTCTAAAGGGACTGCACATGCAATGTTCTTGCGACATGAAGGATTTCTGGGAGCATTAGGTGCATTTATGAGCTATGAAAAGCATGGTTTAGATGACCTCATGGTGCATCAATTAGTTGAAAGGTTCCCAATGGGTGCTCCATATACAGGAGGCAAGATTCATGGCCCACCACTAAGGAATTTGAATGAGAAGGCAATGCAGATTTCATGGATGGAGAAGTTTCTGCAGAAGGGAACTGAGATTACTGCCCCTGTGCCGATGGCTCCTCCTGGAACTACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAGTATTCTGCGATCTGATGCTAGTGCTCTAAATGTTGGTGTTCTCCATCTTATACCAACTCTGGAGGTGTTTCCATTATTAGCAGACCCAAAAATGTATGAACCTAATACTATTGATTTCTCAGATCACAGTGAATTAGAGTATTGGTTGAAGATTTTGTCAGACCATTTGCCAGATCTTGTGGACAAGGCTGTAGCAAGTGAAGGTGGGACTGATGATGCCAAAAGAAGAGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACCTGGCAAGGTTAATGGAGGAGCCTGCTGCATACGGGAAGTTAGGCTTGGCCAAACTATTGGAAATGAGGGAAGAGTGCTTGAGAGAATTCCATTTTTTCGATGCCTATATAAGTATAAAGCAGAGGGAAAATGAGGCATCACTTGCTGTTTTACCTGATTTGTTAATGGAGCTTGATAGTCTGGATGAGGAAACAAGACTACTTACTCTAATTGAAGGTGTTCTTGCTGCGAACATTTTTGATTGGGGATCTCGTGCATGTGTAGATCTCTATCATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAATAAAATGCAGAGACCTTGGCGAGTGGATGATTTTGATGCATTTAGAGAGAGAATGTTCGGGACTGGGGACAAAAGACCTCCTCCGCATAAAAGAGCCTTACTTTTTGTTGATAATTCAGGTGCTGACATTGTTCTGGGGATGCTTCCCCTGGCACGAGAGCTCCTCCGTCGTGGAACTGAAGTGGTTCTGGTTGCAAACTCCCTTCCTGCTTTAAATGATGTGACTGCAATGGAGCTTCCTGATATTGTTGCTGAGGCTGCCAAGCACTGTGACATTCTTAGGCGAGCTGCTGAATCTGGAGGCTTGCTTGTGGATGCAATGAACAATACCTTTGACAGTTCGAAAGAAAATTCATCTTCTGTTCCCTTGATGGTCGTTGAGAATGGGTGTGGTAGTCCATGTATAGACTTCAGGCAGGTCAGCTCTGAGCTGGCTGCCGCTGCAAAAGATGCCGATTTGATAATTTTGGAAGGGATGGGTAGATCTCTTCACACCAACCTCAATGCTCGGTTTCAGTGTGATGCTCTGAAGCTTGCAATGGTGAAAAACCAGAGATTGGCTGAAAAGTTGGTTAAAGGGAACATATACGACTGTGTTTGCAAGTACGAACCTGCTAATTGAAAGCTTTCTATGCACGAGCTCATAGTCAAATGTTATCGGCATCCATAAAGGGTATTTTAGATTAAACTTCTGGGAGCAGAATTATGTGATCAAATTTGACGTTACATTTTGTCTCGTTGTGCAACATATAATTTTTTTTGTTTTATATTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00198	129393	140439	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09680	coaW	EC:2.7.1.33	Pantothenate and CoA biosynthesis	map00770
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process
GO:0015937 coenzyme A biosynthetic process

molecular_function

GO:0004594 pantothenate kinase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000198s00008746.1	PF03630.9	Fumble	45	391	2.40E-139
Glyur000198s00008746.1	PF01937.14	DUF89	578	855	4.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.167
SRR1783600	control	15.053
SRR1783602	moderate drought stress	15.100
SRR1811619	moderate drought stress	14.867

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.329
DRR006520	Root Summer glycyrrhizin high producing strain	19.132
DRR006521	Root Winter glycyrrhizin high producing strain	17.334
DRR006522	Root Winter glycyrrhizin high producing strain	16.798
DRR006523	Root Summer glycyrrhizin low producing strain	18.529
DRR006524	Root Summer glycyrrhizin low producing strain	18.399
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.943
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.778

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.305
SRR2868004	Drought Stress (root)	54.514
SRR2967015	Control (root)	57.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.097
SRR9715740	Leaf	22.990
SRR9715741	Leaf	24.354
SRR9715739	Root	11.362
SRR9715742	Root	24.845
SRR9715743	Root	23.813

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.230
SRR8749028	MeJA induced 9h	38.111
SRR8749029	MeJA induced 9h	19.974
SRR8749030	Uninduced	38.627
SRR8749031	Uninduced	39.669
SRR8749032	Uninduced	19.578

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.224
SRR8400027	Control - Root	43.071