Gene detail

Gene detail information of Glyur000198s00008743

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22220.1	1.00E-65	SufE/NifU family protein
NR	XP_003525426.1	1.05E-94	PREDICTED: iron-sulfur cluster assembly protein 1 [Glycine max]
COG	YP_003278774.1	5.00E-66	FeS cluster assembly scaffold IscU [Comamonas testosteroni CNB-2]
Swissprot	tr\|O49627\|ISU1_ARATH	6.00E-85	Iron-sulfur cluster assembly protein 1 (Precursor)
trEMBL	tr\|V7CBA0\|V7CBA0_PHAVU	1.00E-94	Uncharacterized protein {ECO:0000313\|EMBL:ESW27429.1}

Sequence

Transcript Sequence

>Glyur000198s00008743.1
GCTAGGCACTCCGTTGCCTGGCTCCCTCTAGTAAAAATAAAAAAATCGCATATATTAACAGATGATTAATTAATGCTTCCAATTTTTCAGGCGAAGAGAAAATGGTGATGCTGCTGAGAGTGGGCGCAAAGAGGGTTTTGGGAAGCGTTAGGNTTCCGGCGGCGCGGCAGTACCACGAGAGGGTGGTGGATCACTACAACAACCCCCGCAACGTTGGTTCCTTCGACAAGGATGACCCCACCGTCGGCACCGGTTTGGTGGGTGCACCGGCATGCGGCGACGTCATGAAACTCCAGATCAAGGTTGACGACACCACCGGCAAAATCGTCGACGCTCGCTTCAAGACTTTCGGCTGCGGCTCCGCCATCGCTTCTTCCTCCGTNGCTACTGAATGGGTAAAGGGAAAACACATGGAGGAAGTTTTGTCCATTAAAAACACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTTAAGCTACATTGTAGCATGCTTGCTGAAGATGCCATTAAAGCAGCTGTTAAAGACTACGAAGCTAAGCGGGCTATGACAACTGCTGCTGGAGGAGAGGCAACAACAGGAGATAAGGCCGCTACTGCTTGATTTCTTCCATTCCATGCCTTGAATGATGACGAAAACAACCATTTGTTTGGGATTCTAATTCTGTTTGTCAATCAGTTGTGTGTCAAAGAACACCTTTTCACTTCAGAATTTTGGTTGGAACTGGTTAGTCGGCCAGATTTCATTCACATTATGTGAAGTAAATACTTGTGAAGCTGGGCTATGGTTTCTTATCTGCTTGTTTTGTTTTGCACTTAGCAGGACAAGTCATGTTTTTTGGGTGTTGAGAGTGCAATCCATATTACTATTATTAACTACAAAAATAATTCTTGGACACCCAATAATCAAACTTTTGTAACTTGCGATGAGAGTATGATGCGTCCTTGACTGGGTAAGTATTGGGAATAAGTGCTCAAGTGTAGGTGCACGCTAGGGGACGATGCTGAAGAATGTGATAGATAACATAAACGATTGATGTTATGTGGCCGGATTNGAAATAGCCAATGCTAGGGGACGATTAAGTGTTCTTGAATGAAGTGGACCGTGGACGCAATATGGCATAAATAATTTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00198	116879	118720	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016226 iron-sulfur cluster assembly

molecular_function

GO:0005506 iron ion binding

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000198s00008743.1	PF01592.11	NifU_N	23	148	2.30E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.394
SRR1783600	control	97.742
SRR1783602	moderate drought stress	57.485
SRR1811619	moderate drought stress	57.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.840
DRR006520	Root Summer glycyrrhizin high producing strain	65.030
DRR006521	Root Winter glycyrrhizin high producing strain	26.133
DRR006522	Root Winter glycyrrhizin high producing strain	25.696
DRR006523	Root Summer glycyrrhizin low producing strain	31.276
DRR006524	Root Summer glycyrrhizin low producing strain	30.984
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.681
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.951

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	115.285
SRR2868004	Drought Stress (root)	107.728
SRR2967015	Control (root)	107.966

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.195
SRR9715740	Leaf	58.064
SRR9715741	Leaf	61.662
SRR9715739	Root	82.897
SRR9715742	Root	57.022
SRR9715743	Root	62.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.579
SRR8749028	MeJA induced 9h	22.421
SRR8749029	MeJA induced 9h	39.844
SRR8749030	Uninduced	12.698
SRR8749031	Uninduced	6.262
SRR8749032	Uninduced	8.274

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	87.686
SRR8400027	Control - Root	89.795