Gene detail

Gene detail information of Glyur000198s00008742

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62930.1	2.00E-88	SGNH hydrolase-type esterase superfamily protein
NR	XP_004508871.1	1.08E-135	PREDICTED: GDSL esterase/lipase At5g62930-like [Cicer arietinum]
Swissprot	tr\|Q9FM04\|GDL88_ARATH	1.00E-110	GDSL esterase/lipase At5g62930
trEMBL	tr\|A0A072V154\|A0A072V154_MEDTR	1.00E-133	GDSL esterase/lipase plant-like protein {ECO:0000313\|EMBL:KEH31840.1}

Sequence

Transcript Sequence

>Glyur000198s00008742.1
CTCCGCTGTTAATACATAAATCAACCGATCAGTAATAAATAAATAAATTGTTATATAATATCAACGTGTGACCGNGTGAGTGGTGCGAACTGTGCAGTGCAGTGGTGTGAGAGTGGAATCGCGTTGGCGCGAGAATGAGGGAAAACATTGTTCTGTTTGGAGATTCGATAACGGAGCAATCGTTCCGAGAAAATGGATGGGGTGCTGCGCTCGCCAATGCCTATTCTCGCAAGCTGATGTGCTTGTTCGTGGGTATGGTGGATACAACACTAGGTGGGCTTTGTTCTTACTGCATCACCTCTTCCCTCTGGACTCAACTAAACCACCTCTTGCTACCACAATTTTCTTTGGCGCCAATGATGCGGCTTTGGTGGGAAGAACCAGCGAAAGGCAACATGTACCCATTGAAGAGTTCAAACAAAACCTCAGAAAAATTGTTCTACATTTGAAGTCATGCTCACCAAAAATGCTAATTGTGCTTATTACTCCACCTCCAGTTAGTGAGGAAGGGCGTCTAGCATATGCGAAATCCATATATGGTGACAATGCTACAAAATTGCCCGAAAGAACAAATGAAGTTGCTGGTCAATATGCAAACGCATGTGTTGAGATGGCTAAGGAAATGGGTGTGTCGTATATCAATCTATGGTCCAAAATGCAAGAAACTGATGGCTGGCAAAAGAAATTTTTGAGTGATGGGTTGCACCTGACACCAGATGGAAATGCGGTAGTCTACCAAGAAGTGATAAAGGTGTTCAACGAGGCAGGACTTTGTGCTGATAAAATGCCATATGATTTCCCTCACCACTCAATAATTGATGACAAAAATCCTGGAAGCGCTTTCCAGCAGAATGTTTGTGATGCCACATTATAGTAGGGGTTCTGGTTTAGTCTTTGGTGACCTGCGATTTTCTTCCGAACAATATATGATTTTAATAAAACCTTGTTCACTGTGGTTGGTGCTTGTACTTGTGTTGTGAACATTTTATCTTTTAATTTTATCCCGCGGTGTTCTACTGTTCTTACCCACGTTGCCCCACCTGTTCTGTTGTGCTTGCTTTTGTCTACTACTAAAGCCAATCATGGTAACTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00198	112818	116132	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000198s00008742.1	PF00657.17	Lipase_GDSL	11	181	1.20E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.312
SRR1783600	control	6.065
SRR1783602	moderate drought stress	6.148
SRR1811619	moderate drought stress	5.624

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.993
DRR006520	Root Summer glycyrrhizin high producing strain	2.006
DRR006521	Root Winter glycyrrhizin high producing strain	0.611
DRR006522	Root Winter glycyrrhizin high producing strain	0.591
DRR006523	Root Summer glycyrrhizin low producing strain	2.854
DRR006524	Root Summer glycyrrhizin low producing strain	3.059
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.390
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.365
SRR2868004	Drought Stress (root)	16.153
SRR2967015	Control (root)	17.964

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.159
SRR9715740	Leaf	10.911
SRR9715741	Leaf	7.767
SRR9715739	Root	5.791
SRR9715742	Root	4.564
SRR9715743	Root	4.948

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.919
SRR8749028	MeJA induced 9h	19.252
SRR8749029	MeJA induced 9h	27.912
SRR8749030	Uninduced	8.327
SRR8749031	Uninduced	5.148
SRR8749032	Uninduced	6.311

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.059
SRR8400027	Control - Root	17.909