Gene detail

Gene detail information of Glyur000198s00008738

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06110.1	2.00E-09	SKP1/ASK-interacting protein 16
NR	XP_004508873.1	4.06E-156	PREDICTED: protein ApaG-like isoform X1 [Cicer arietinum]
COG	YP_006372755.1	9.00E-33	ApaG protein [Tistrella mobilis KA081020-065]
trEMBL	tr\|A0A072URZ9\|A0A072URZ9_MEDTR	3.00E-150	CO2+/MG2+ efflux protein ApaG {ECO:0000313\|EMBL:KEH31833.1}

Sequence

Transcript Sequence

>Glyur000198s00008738.1
ACATAACCCGTCAATAACAGTCACAATCCCCGCCGGACCCGCGATGCATTTTCAGTCTTGAATTCTGCTCAGAAAAAGATAACGAAGCTGTGAATGCCACTGAGGACAATTAAGTTGCTACGAGGACAGGAATAATAGGATTGGTTTTCTTTCTGGGGAGTTAATTAAATTGGAATTTGGAAGGCTATCGGAAAATGCAATCGTTATCGTTAAGTATGAGGAGTTTGGCGGGTTCGCGGTTGCTTGGTGTTGAGGGGGGAAGAGCGAAGAGGAGGTGTGGCATCGTGGCATGTGCTTCGGAGGGAGAGAGTCCAACCTCCTCCAGTAGTACCAGCTCCTTTCTCTCTCGGACACAAACCTACGCCCTCTTGAAGCAGCAAATGGAGGTAGCTGCTAAATCCGAGGATTACAAGGAAGCCGCTAGAATTCGAGACTCGCTTAAGTTATTTGAAGAGGAGGAACCTGTTTTGCGTCTAAGAAGACTGATGAAGGAAGCAATCGCTGATGAGAGGTTCCAGGATGCAGCTAGTTATCGTGATGAGCTAAAAAAAATTGCCCCGCACTCTCTTTTAAAATGTTCCAGTGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATCGAGGGCAGAAGTCAGCCTTCAAAGGGGTTATACTTTTTTGCATATAGAATAAGAATTACCAATAACTCAGATCACTCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCCAATGGGAAAATAGAAAATGTCTGGGGAATCGGGGTTGTTGGTGAACAGCCAGTACTTCTTCCCAAGACTAGTTTTGAATACTCTTCAGCATGCCCATTAAGCACACCAAATGGTAGAATGGAAGGTGACTTTGAGATGATCCATATTGATAGAGTAGGCTCACGTTCATTTAATGTGGCCATTGCCCCGTTTTCTCTCTCCCTGCTTGGAGATGATGACGTTCATACTATTTGAGATCAAACTGCTACATCACCTTCGGAGATCATGCATGTCCGATTATTAGCATCTGGAATATGTAAAGGATTATCATTCTCACAGCCATTCTGAGGAATTAAAGNGGGCTAATTGCATTATGAAGTGTAACATATCCGATTGTTGCGAATAAACTATCAGCATATTGATGTGTGAAAAACTCAAGAAAGAAATCAATATTTATATAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00198	95261	98590	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000198s00008738.1	PF02151.14	UVR	59	87	2.40E-05
Glyur000198s00008738.1	PF02151.14	UVR	93	120	1.40E-06
Glyur000198s00008738.1	PF04379.9	DUF525	148	232	1.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.168
SRR1783600	control	9.199
SRR1783602	moderate drought stress	11.111
SRR1811619	moderate drought stress	11.570

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.916
DRR006520	Root Summer glycyrrhizin high producing strain	7.867
DRR006521	Root Winter glycyrrhizin high producing strain	8.157
DRR006522	Root Winter glycyrrhizin high producing strain	7.863
DRR006523	Root Summer glycyrrhizin low producing strain	10.648
DRR006524	Root Summer glycyrrhizin low producing strain	11.269
DRR006525	Leaf Summer glycyrrhizin high producing strain	52.721
DRR006526	Leaf Summer glycyrrhizin high producing strain	52.871

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.180
SRR2868004	Drought Stress (root)	5.940
SRR2967015	Control (root)	7.560

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.359
SRR9715740	Leaf	89.792
SRR9715741	Leaf	51.679
SRR9715739	Root	2.935
SRR9715742	Root	5.587
SRR9715743	Root	5.491

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.159
SRR8749028	MeJA induced 9h	2.966
SRR8749029	MeJA induced 9h	1.671
SRR8749030	Uninduced	1.802
SRR8749031	Uninduced	0.727
SRR8749032	Uninduced	1.403

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.008
SRR8400027	Control - Root	18.542