Gene detail

Gene detail information of Glyur000198s00008731.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40380.1	6.00E-64	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
NR	XP_004508879.1	0	PREDICTED: cysteine-rich receptor-like protein kinase 42-like [Cicer arietinum]
Swissprot	tr\|Q9LMB9\|CRK1_ARATH	3.00E-116	Cysteine-rich receptor-like protein kinase 1 (Precursor)
trEMBL	tr\|V7CBB0\|V7CBB0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27439.1}

Sequence

Transcript Sequence

>Glyur000198s00008731.1
ATGCTATCTGAAAACCTTATTATCTGGGCAATATTCCTGATATGGTCGTCGTTATTGACGCCTTCAACCTCTGAGGGTGGTGGGAATGGGATACAGGAGGCTGGTCTCACTTGCGCGTCTTACTCGTACCCAAGTGAAGGTGGCAACAAGTTGATGATGCAGCAAAGCATGATGGCCCTAATGGACGCGATGTCGTCTCAGGTGAAAGAACGAGGGTGGGGAGCGCAGACACTATACGGTTGGCACCGGCCAATGCACGCCTTAGGCCAATGCAACCGCGATCTCAATCGCACACTGTGCTACGCTTGTTTCACCCAAGCCAGACATATGTTGTCCAGGTGCGTGCCAAACGTTGCCGGTCGAGTTTACATTGATGGCTGTTTCCTTCGCTATGACAATTACACTTTCTTCGCCGAGAGCGTGGACCCCACTCGCGACACCAACGTGTGCGATCGGTCGCACCAGGGAAACAACGAAGAATTCTCCAAACGGGTTGCGTCGGTGGTGTCGAACGTGAGCACGACCGCAGGGGAACAAGGGTTTGCGGTAGATGGGGATGGGGGTGTTTTCGCGTTGGCGCAGTGCTGGGAGACACTGGATAAACCCAGCTGCCAAAGATGCTTGAGAGAAGCGGGGGAAAGAGTTCAGGGATGTGTTCCCGGTGCCGAGGGTAGAAGCTTATTTACGGAAAGGCCTAGTGTCTGGATAATTGTTGCATGTGGATCAGCAATTGTAGTGATCTTACTTATCGTCCTTGGTGCACTTCTGATGATCAGGAAGAGAAAAGCNTCGCATGGAAAAAGAAGCAACGATTTTGGTGTGTCACCTGGTTTTGCCAACGTAGCAGTTGGTTTCAGTTTTAGGTACGATGTGCTTGAGAAGGCCACAAACTATTTTGATCCCGCAAACAAATTAGGCCAGGAAAGACAGGGAGGAGCCGGTTCTGTGTTCAAAGGAACACTCCCTTCAGGGAGGACTGTTGCTGTTAAACGACTGTTTTTTGATACACGACAATGGACAGATGGGTTATTCAATGAGGTCAATTTGATTAACGGGATTCAGCACAAGAATGTGGTGAAACTTTTGGGGTGCAGCATTAATGAAGGCCCTGAATGTCTGTTGGTTTATGAATTTGTGCCCAATAAGAGTCTTGATCAAATCCTTTTCGGTGAGTGGTCCAGTTTAAATGTATATCATAAGCATAAGCATTCCACACACACACACACACACACACACATATGGGGATATATGGCTCCCGAGTATGTCAGCCAAGGAAAACTGACAGAGAAGGCCGATGTCTATGCTTTTGGTGTGATGCTTGTTGAAATCGTATGTGGTAAAAAGAACAGTGTTTACACACAGGGGTCAACTTCACTACTCCACTGTGTCTGGAAGAATTACAAGGCAAACGATATCACAACATCAGTTGATCCTTCTCTGTGTGGCAAGTTTGTGGTAGAAGAGGCAACAAATGCCCTCCAAGCTGGCCTTCTTTGTACACAATCTTCTATCACTCTTAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAAAGACTGCGTTATTCCCTCCCCAAAGCAACAACCATTCCACAATCATGGCGTGCTTAGTCTACATGACCGCATCTTAGGTTCCACCATGAGCATTCTGTCAAATGGCCAGTCGAGTGTAAGGTCATCTTTCCACAGCACCACCAGTTCCTTAACCCCGAATGAGGATTTTACACTGCTAGTGCAACAAAATTCCTTTTCTTCTTCTACCAAGTCTAACACTACGGAGAGCCATGATTCAAATATCCAAGCAAATATTGGGGCACCTGAGCCAAGTACTAGTAGCGAAGAGGAAACTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00198	70994	75020	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000198s00008731.1	PF01657.12	Stress-antifung	49	136	3.70E-13
Glyur000198s00008731.1	PF01657.12	Stress-antifung	149	227	5.50E-09
Glyur000198s00008731.1	PF07714.12	Pkinase_Tyr	310	391	5.00E-09
Glyur000198s00008731.1	PF07714.12	Pkinase_Tyr	400	471	2.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.481
SRR1783600	control	0.494
SRR1783602	moderate drought stress	0.409
SRR1811619	moderate drought stress	0.406

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.232
DRR006520	Root Summer glycyrrhizin high producing strain	0.230
DRR006521	Root Winter glycyrrhizin high producing strain	0.239
DRR006522	Root Winter glycyrrhizin high producing strain	0.234
DRR006523	Root Summer glycyrrhizin low producing strain	0.593
DRR006524	Root Summer glycyrrhizin low producing strain	0.536
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.050
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.046
SRR2868004	Drought Stress (root)	0.053
SRR2967015	Control (root)	0.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.102
SRR9715740	Leaf	0.136
SRR9715741	Leaf	0.000
SRR9715739	Root	0.241
SRR9715742	Root	0.233
SRR9715743	Root	0.066

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.115
SRR8749028	MeJA induced 9h	0.036
SRR8749029	MeJA induced 9h	0.348
SRR8749030	Uninduced	0.107
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.211

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.258
SRR8400027	Control - Root	0.253