Gene detail information of Glyur000198s00008729 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20140.1 | 0 | Leucine-rich repeat transmembrane protein kinase |
| NR | XP_003525510.2 | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max] |
| COG | YP_004775215.1 | 9.00E-61 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|C0LGQ5|GSO1_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) |
| trEMBL | tr|K7MKP5|K7MKP5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G09530.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00198 | 51689 | 54625 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000198s00008729.1 | PF08263.7 | LRRNT_2 | 30 | 66 | 8.60E-10 |
| Glyur000198s00008729.1 | PF00560.28 | LRR_1 | 96 | 118 | 0.044 |
| Glyur000198s00008729.1 | PF13516.1 | LRR_6 | 190 | 210 | 0.23 |
| Glyur000198s00008729.1 | PF13855.1 | LRR_8 | 241 | 299 | 2.70E-08 |
| Glyur000198s00008729.1 | PF00560.28 | LRR_1 | 312 | 332 | 0.45 |
| Glyur000198s00008729.1 | PF13516.1 | LRR_6 | 360 | 380 | 1.8 |
| Glyur000198s00008729.1 | PF00560.28 | LRR_1 | 601 | 623 | 0.17 |
| Glyur000198s00008729.1 | PF00560.28 | LRR_1 | 626 | 646 | 0.51 |
| Glyur000198s00008729.1 | PF00560.28 | LRR_1 | 697 | 719 | 0.9 |
| Glyur000198s00008729.1 | PF13855.1 | LRR_8 | 794 | 847 | 2.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.102 |
| SRR1783600 | control | 0.099 |
| SRR1783602 | moderate drought stress | 0.078 |
| SRR1811619 | moderate drought stress | 0.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.406 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.402 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.190 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.185 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.150 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.223 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.619 |
| SRR2868004 | Drought Stress (root) | 10.997 |
| SRR2967015 | Control (root) | 15.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.114 |
| SRR9715740 | Leaf | 0.173 |
| SRR9715741 | Leaf | 0.244 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.599 |
| SRR9715743 | Root | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.073 |
| SRR8749028 | MeJA induced 9h | 1.752 |
| SRR8749029 | MeJA induced 9h | 0.040 |
| SRR8749030 | Uninduced | 0.043 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.553 |
| SRR8400027 | Control - Root | 1.102 |