Gene detail information of Glyur000198s00008719 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10790.1 | 3.00E-64 | UBX domain-containing protein |
| NR | KHN18435.1 | 0 | FAS-associated factor 2-B [Glycine soja] |
| trEMBL | tr|V7CBB6|V7CBB6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27449.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00198 | 1164 | 3231 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000198s00008719.1 | PF00789.15 | UBX | 301 | 380 | 5.20E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.737 |
| SRR1783600 | control | 2.837 |
| SRR1783602 | moderate drought stress | 1.911 |
| SRR1811619 | moderate drought stress | 2.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.900 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.236 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.119 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.118 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.604 |
| SRR2868004 | Drought Stress (root) | 8.267 |
| SRR2967015 | Control (root) | 7.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.137 |
| SRR9715740 | Leaf | 16.757 |
| SRR9715741 | Leaf | 6.021 |
| SRR9715739 | Root | 3.468 |
| SRR9715742 | Root | 2.439 |
| SRR9715743 | Root | 2.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.016 |
| SRR8749029 | MeJA induced 9h | 0.045 |
| SRR8749030 | Uninduced | 0.095 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.941 |
| SRR8400027 | Control - Root | 6.158 |