Gene detail

Gene detail information of Glyur000197s00010102

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09810.1	1.00E-95	Nucleotide-sugar transporter family protein
NR	ACU24339.1	3.24E-145	unknown [Glycine max]
Swissprot	tr\|Q9SRE4\|UGAL2_ARATH	1.00E-64	UDP-galactose transporter 2
trEMBL	tr\|C6TN47\|C6TN47_SOYBN	1.00E-145	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU24339.1}

Sequence

Transcript Sequence

>Glyur000197s00010102.1
TAGCGTAGAGCATCGCACACAGCAACGCAACGCAACCATAACGTGCTTTGTGCTTTGTGTTGTTGGGTGCGTAGCGCGTGCTACTCCTACTGCAATCTGCAAACTCCATCCAACTCCAACCTCCAAAATCTCTTGTTCCATTTTCCCCACATCTCCCAACACTCCAAGCTCTAATGACACCTCCATTCACGGCTTCTTTGTTTATTTAAATGTGTTGACTCCTGCACATCATTTGAACATGGACGGAATGTTATGGAGGCTAGTTAAAAGAGATCAGTGTTAAGTTGCGAAGAATTGTAAAGAACATGGCTCCAGCTAGCAAGGCTGAGAAGAAGGCAGCAGTTGATGCTGCTGCATGGGTATTCAATGTTGTCACTTCAGTTGGAATTATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGCTACAACATTAACGGGTCTTCATTTTGCTACCACAACTTTGATGACGAGCATACTACGGATGCTGGGATATGTCCAGGCCTCTCATTTGCCATTTCCCGAACTTCTAAAATTTGTTATCTTTGCTAACTTCTCTATTGTTGGNATGAATGTCAGTCTAATGTGGAACTCAGTTGGATTCTATCAAATTGCTAAGTTGAGTATGATCCCTGTATCCTGCTTGTTGGANGTTGTTTTGGACAAGATTCGCTATTCAAGAGACACAAAACTGAGCATAGGTATCGTTCTTTTGGGCGTCGGTGTTTGCACTGTCACCGATGTGAGTGTTAACTCAAGAGGTTTCATTGCTGCCTTTATAGCAGTGTGGAGCACTTCTCTGCAACAATATTATGTTCATTTTCTTCAACGGAAGTATTCACTAAGTTCTTTCAACCTTTTGGGACATACAGCACCTGCACAGGCTGCATCACTACTGTTAGTAGGCCCTTTTCTAGACTATTGGTTGACAAACAACAGAGTTGACCAATATGCTTATAATGCAGCCTCTTTAGTAAATGTTCATATTCCTGTCATGCACCATTGCAGTTGGGACCAACCTCAGCCAATTTATCTGCATTGGCAGATTTACTGCTGTGTCTTTTCAAGTACTTGGCCATATGAAGACAATACTTGTTTTAATAATGGGGTTCTTTTTCTTTGGGAGGGAGGGTCTCAATCTTCACGTGGTTTTNGGGATGGTAATAGCTGTGGTTGGAATGATATGGTATGGCAACGCCTCATCAAAGCCTGGTGGAAAGGAGCGTTGGAGTCACTCTCTCCCCACCAACAAAATAGAAACCCGATAGTTCCCTCTCATTGTGATGGTTTGTTTTATGTGCAAAAGTTGAGCACACGAAGATAGTTGATTATTCTAGGAAAGTATATTTAATTACTGGAAATTAAACCTTATTGGTTCTAATTATTTTAGCCTCATTTGTAATTCTTTAAATTTGATTTCTTGTTTTGGATCCCAGTGGATATTTCCTTATAGGCCTGTGTTCCCTACAAAATTTTCATCATCTCCATGATCAGAATGTATTTATCCNAGACTCATAATTGTGATCTTTGCTTTGATGGTGTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	233539	236943	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010102.1	PF03151.11	TPT	156	225	1.80E-10
Glyur000197s00010102.2	PF03151.11	TPT	153	222	1.80E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.439
SRR1783600	control	13.551
SRR1783602	moderate drought stress	5.194
SRR1811619	moderate drought stress	5.331

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.367
DRR006520	Root Summer glycyrrhizin high producing strain	18.198
DRR006521	Root Winter glycyrrhizin high producing strain	7.778
DRR006522	Root Winter glycyrrhizin high producing strain	7.350
DRR006523	Root Summer glycyrrhizin low producing strain	11.668
DRR006524	Root Summer glycyrrhizin low producing strain	11.321
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.342
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.572

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.711
SRR2868004	Drought Stress (root)	25.509
SRR2967015	Control (root)	23.798

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.561
SRR9715740	Leaf	9.072
SRR9715741	Leaf	6.224
SRR9715739	Root	9.021
SRR9715742	Root	10.933
SRR9715743	Root	8.172

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.882
SRR8749028	MeJA induced 9h	20.584
SRR8749029	MeJA induced 9h	16.392
SRR8749030	Uninduced	5.739
SRR8749031	Uninduced	2.512
SRR8749032	Uninduced	3.682

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.473
SRR8400027	Control - Root	39.181