Gene detail

Gene detail information of Glyur000197s00010101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34030.1	7.00E-75	Ribosomal protein S13/S18 family
NR	XP_004496437.1	1.23E-106	PREDICTED: 40S ribosomal protein S18-like [Cicer arietinum]
COG	YP_447903.1	4.00E-42	30S ribosomal protein S13P [Methanosphaera stadtmanae DSM 3091]
Swissprot	tr\|P34788\|RS18_ARATH	7.00E-107	40S ribosomal protein S18
trEMBL	tr\|M5Y590\|M5Y590_PRUPE	3.00E-106	Uncharacterized protein {ECO:0000313\|EMBL:EMJ27040.1}

Sequence

Transcript Sequence

>Glyur000197s00010101.1
CTTTTTCTTTATTTCATTTTTTTTGTCAACCTTTTTCTTTATTCCTTAAAATTTGCCTTCATAGGAGTTGGGGATTAGGGGGTCTCGGGTCCTCTGTNTTTGACCCACAGTGTTGTTGTTTTTGTTTTCCTTGTTTATTTTTTTTTCTGTGACCTTTTCATGGGCCTGGCCCAACCCCACCAAAAACAGAAGAGTGCAGGGTAAAATCGTCAATCTACGTACACGGCACACTATATATATATAAGATCTGTTAGTTCATAAACCCTAGAATTTCAGATCCTCTCAATCGGCCACCACCAACAAACACAGCCTTGGCGGCAACAGTCACTCTCCAACGAATCTTCGGCGGCGAAAATGTCTCTGGTGGCGAACGAGGAGTTCCAGCACATTCTGCGTGTGCTGAACACGAACGTGGATGGGAAGCAGAAGATAATGTTCGCTATGACATCCATCAAGGGTATCGGCAGGAGATTCGCCAACATCTGTTGCAAGAAGGCCGACGTCGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCTGAGCTGGACAATCTGATGACGGTGGTTGCGAACCCTCGCCAATTCAAGATCCCTGATTGGTTCCTCAACAGGAAGAAGGACTACAAGGATGGCAAATACTCTCAGGTCGTCTCTAATGCCCTCGATATGAAGCTCAGGGATGACCTTGAGAGACTCAAGAAAATCAGAAACCACCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACTGGCCGCAGGGGAAAGACCGTTGGTGTCTCAAAGAAGCGTTGAAGCTGTTATGCTTTTGGTTTGGAGATTAGAGATGATGTTGAAGAGGCATATTTGAAGTACATTAGACATGTTTCCTATATACCTACTTTGTATTGGTTGTTGAATGCGATGACAATTTCAGTTTTGTTTGTTTATTTGCGTTAAGTTTTTCATTTAGTTGAATGTTTTGATAGAGAACCTTGANTAGTTTTGATGAAATTGCGTATTCGCATTGTTTCCTAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	230850	232739	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010101.1	PF00416.17	Ribosomal_S13	14	142	1.10E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	201.250
SRR1783600	control	201.391
SRR1783602	moderate drought stress	191.058
SRR1811619	moderate drought stress	190.120

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	634.875
DRR006520	Root Summer glycyrrhizin high producing strain	631.169
DRR006521	Root Winter glycyrrhizin high producing strain	416.948
DRR006522	Root Winter glycyrrhizin high producing strain	405.729
DRR006523	Root Summer glycyrrhizin low producing strain	454.518
DRR006524	Root Summer glycyrrhizin low producing strain	453.694
DRR006525	Leaf Summer glycyrrhizin high producing strain	149.798
DRR006526	Leaf Summer glycyrrhizin high producing strain	148.797

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	728.425
SRR2868004	Drought Stress (root)	444.696
SRR2967015	Control (root)	432.385

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	263.087
SRR9715740	Leaf	238.717
SRR9715741	Leaf	208.918
SRR9715739	Root	625.643
SRR9715742	Root	451.147
SRR9715743	Root	475.983

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	531.802
SRR8749028	MeJA induced 9h	244.715
SRR8749029	MeJA induced 9h	329.366
SRR8749030	Uninduced	50.883
SRR8749031	Uninduced	24.252
SRR8749032	Uninduced	96.719

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	454.164
SRR8400027	Control - Root	397.528