Gene detail information of Glyur000197s00010097 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39460.2 | 5.00E-103 | S-adenosylmethionine carrier 1 |
| NR | AFK45388.1 | 0 | unknown [Lotus japonicus] |
| Swissprot | tr|Q94AG6|SAMC1_ARATH | 1.00E-157 | S-adenosylmethionine carrier 1, chloroplastic/mitochondrial (Precursor) |
| trEMBL | tr|I3SYP6|I3SYP6_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK45388.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00197 | 187768 | 193708 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000197s00010097.1 | PF00153.22 | Mito_carr | 48 | 119 | 3.30E-10 |
| Glyur000197s00010097.1 | PF00153.22 | Mito_carr | 123 | 204 | 4.30E-15 |
| Glyur000197s00010097.1 | PF00153.22 | Mito_carr | 219 | 305 | 7.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.148 |
| SRR1783600 | control | 6.196 |
| SRR1783602 | moderate drought stress | 6.546 |
| SRR1811619 | moderate drought stress | 6.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.937 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.994 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.725 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.674 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.185 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.429 |
| SRR2868004 | Drought Stress (root) | 12.527 |
| SRR2967015 | Control (root) | 15.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.479 |
| SRR9715740 | Leaf | 5.982 |
| SRR9715741 | Leaf | 5.674 |
| SRR9715739 | Root | 1.978 |
| SRR9715742 | Root | 5.233 |
| SRR9715743 | Root | 5.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.979 |
| SRR8749028 | MeJA induced 9h | 9.034 |
| SRR8749029 | MeJA induced 9h | 12.307 |
| SRR8749030 | Uninduced | 7.055 |
| SRR8749031 | Uninduced | 4.369 |
| SRR8749032 | Uninduced | 5.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.272 |
| SRR8400027 | Control - Root | 14.500 |