Gene detail information of Glyur000197s00010093 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78310.1 | 4.00E-25 | VQ motif-containing protein |
| NR | XP_003602826.1 | 1.20E-49 | hypothetical protein MTR_3g099400 [Medicago truncatula] |
| trEMBL | tr|G7J3Y2|G7J3Y2_MEDTR | 4.00E-50 | VQ motif protein {ECO:0000313|EMBL:AES73077.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00197 | 164101 | 164805 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000197s00010093.1 | PF05678.9 | VQ | 2 | 29 | 9.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.858 |
| SRR1783600 | control | 4.383 |
| SRR1783602 | moderate drought stress | 7.969 |
| SRR1811619 | moderate drought stress | 7.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.725 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.263 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.993 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.651 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.171 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.679 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.529 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.150 |
| SRR2868004 | Drought Stress (root) | 0.018 |
| SRR2967015 | Control (root) | 0.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.023 |
| SRR9715739 | Root | 0.188 |
| SRR9715742 | Root | 0.084 |
| SRR9715743 | Root | 0.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.025 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.129 |
| SRR8749032 | Uninduced | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.097 |
| SRR8400027 | Control - Root | 0.092 |