Gene detail information of Glyur000197s00010089 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71720.1 | 7.00E-151 | Nucleic acid-binding proteins superfamily |
| NR | KHN03693.1 | 0 | 30S ribosomal protein S1 like A [Glycine soja] |
| COG | YP_007080196.1 | 2.00E-31 | 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327] |
| Swissprot | tr|P29344|RR1_SPIOL | 9.00E-25 | 30S ribosomal protein S1, chloroplastic (Precursor) |
| trEMBL | tr|K7N3Z8|K7N3Z8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G31060.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00197 | 138961 | 142967 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000197s00010089.1 | PF00575.18 | S1 | 390 | 461 | 1.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.999 |
| SRR1783600 | control | 0.974 |
| SRR1783602 | moderate drought stress | 1.022 |
| SRR1811619 | moderate drought stress | 1.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.947 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.905 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.863 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.823 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.937 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.685 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.315 |
| SRR2868004 | Drought Stress (root) | 3.299 |
| SRR2967015 | Control (root) | 4.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.325 |
| SRR9715740 | Leaf | 25.744 |
| SRR9715741 | Leaf | 12.067 |
| SRR9715739 | Root | 0.149 |
| SRR9715742 | Root | 0.920 |
| SRR9715743 | Root | 0.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.921 |
| SRR8749028 | MeJA induced 9h | 4.711 |
| SRR8749029 | MeJA induced 9h | 2.775 |
| SRR8749030 | Uninduced | 2.918 |
| SRR8749031 | Uninduced | 1.599 |
| SRR8749032 | Uninduced | 0.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.288 |
| SRR8400027 | Control - Root | 3.441 |