Gene detail

Gene detail information of Glyur000197s00010088

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58590.1	8.00E-65	RAN binding protein 1
NR	XP_003556169.1	6.47E-137	PREDICTED: ran-binding protein 1 homolog a-like [Glycine max]
Swissprot	tr\|Q8RWG8\|RBP1B_ARATH	2.00E-98	Ran-binding protein 1 homolog b
trEMBL	tr\|I1NH59\|I1NH59_SOYBN	2.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G31070.1}

Sequence

Transcript Sequence

>Glyur000197s00010088.1
AACACACTATTCTCATTCTCTACTNTCGCTACCCCCTCACGCTTTCTAAACCCTAGCGGTACCACACTCAAACACTCTCTCTCACTCTCTAGAAGATGTCGAGCGCCGATCCCGAGCACCGGGAAGAGGAGGAGGCACCCGCCGCCGGCGATGACGAGGACACCGGAGCTCAAGTCGCTCCTATCGTCAAGCTCGAGGAGGTTGCCGTCACCACCGGCGAAGAGGAGGAAGATCCCATTCTAGATCTTAAATCGAAGCTCTACCGGTTCGATAAGGATGGAAACCAGTGGAAGGAGAGAGGCGCTGGTACTGTGAAGTTCCTGAAGCACAAGGTCACTGGCAAGGTTAGGCTTCTCATGAGGCAATCCAAGACACTCAAGATCTGTGCCAATCATCTCATTGTACCTACGATGAGTGTGCAAGAGCATGCTGGGAACGAGAAATCCTGCGTTTGGCATGCCAGGGATTTCGCTGATGGTGAACTCAAGGATGAGCTTTTCTGCATCCGTTTTCCTTCTATTGAAAATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAGTCCCAGAAGAAAGAGGATGATGACGAGGAAACATCTGCAGCAGCTGGTCTTATTGAGAAATTGAGTGTTGAAGAGAAGGCTGATGCAGAGAAGAAAGATGAAGAGAAGCCTGAGGACAAAAAAACTGGGGAACAAGAATCTGCACCAGGAGAGGAAAGTAAGGCAGATGGAGCTAAGAAAGTTGAAGAGCCCACGTCCTCAGCTTGAGTATTTATTTGTTCATATTTTCATACTGCTAGGCAATCTGACAAGGTTGTGGTCGATGTTTTTGCCGCCCATATCTTGGGATATTCTCATATATACTTAATAGTCGTCGGATTGTGTCACTACCATGCAATTGAGCTGTTTGTGTCCTCTCGAGTTTTTTCAGCAAGCGAAGTTAGGGTCGGGTCTTGAATTTGGAGGCTTGTCTGGTTGAGCTTTCGGGGTATTGGGAGTTTATTGTTATTGCTATTTTCATTCTACATATGTATTTGTTGCGAGTATCGAGTCGTGTTGGTTGGGAGGGTGCAGTCAAGAAATGGTCAAAGTTATAAGCAAAGGTTTTTGGATTTTTTTGTTCTGAGTTTCACATTTTTTTTAAGACTCGACTACGTGGTTTCTTCGCGCGCACGCTTCTGCTATAATTTTCTTCGTTCCGTGGTTCAACCCAAGTAAGCTTCCCGAACCTCGAGGGTTGGCATTAAGTTGTTATTATCATATTGCTATAAGTGGGAGAAAAATNTGGGGAAAATAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	134565	137858	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0046907 intracellular transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010088.1	PF00638.13	Ran_BP1	38	155	1.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	120.410
SRR1783600	control	120.695
SRR1783602	moderate drought stress	116.514
SRR1811619	moderate drought stress	114.747

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	259.881
DRR006520	Root Summer glycyrrhizin high producing strain	256.314
DRR006521	Root Winter glycyrrhizin high producing strain	223.400
DRR006522	Root Winter glycyrrhizin high producing strain	217.181
DRR006523	Root Summer glycyrrhizin low producing strain	163.921
DRR006524	Root Summer glycyrrhizin low producing strain	165.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	67.860
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.859

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	353.828
SRR2868004	Drought Stress (root)	223.049
SRR2967015	Control (root)	199.783

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	153.502
SRR9715740	Leaf	140.912
SRR9715741	Leaf	137.155
SRR9715739	Root	187.915
SRR9715742	Root	199.550
SRR9715743	Root	192.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	406.739
SRR8749028	MeJA induced 9h	233.605
SRR8749029	MeJA induced 9h	234.907
SRR8749030	Uninduced	68.707
SRR8749031	Uninduced	26.975
SRR8749032	Uninduced	34.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	287.225
SRR8400027	Control - Root	265.166