Gene detail

Gene detail information of Glyur000197s00010086.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34110.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_007143588.1	0	hypothetical protein PHAVU_007G084400g [Phaseolus vulgaris]
COG	YP_004775215.1	4.00E-60	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGF5\|Y1341_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At1g34110 (Precursor)
trEMBL	tr\|V7BCI4\|V7BCI4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15582.1}

Sequence

Transcript Sequence

>Glyur000197s00010086.1
ATGGAAAATACTGTCCCCCACAGTGTTACCACTTTGTTGTTTTCCTTTCTCTTCTTCTGCCTCACCCTTACAAAGATACAAGTCACTTGTCTCTCACCTGATGGACAAGCCCTTCTTTCTCTTCTGTCTGCAGCTGGCCCTGCTGCAAAATCATCACCTTCTGTTCTTCTCTCTTCATGGAACCCATCAAGCTCAACACCTTGTTCATGGAAGGGCATTACTTGCTCCCCACAAGGTAGAGTCATTTCCCTCTCTATTCCAGACACTTTCCTCAACCTCTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGTTGCAACTTCTCAATCTTTCCTCCACTAATGTCTCTGGCTCCATCCCACCCTCTTTTGGTCAACTCTCCCATCTTCAACTTCTTGACCTCTCCTCAAACTCACTCACTGGTTCCATTCCTGCTGAACTTGGAAGCCTATCTTCCCTTCAATTCCTTTTCTTGAACTCCAACAGATTGACTGGAACCATTCCTCAGCTTCTTGCTAACCTTACTTCACTTGAAGTTCTATGCCTCCAAGACAATCTTCTTAATGGGTCAATCCCATCACAGTTAGGATCTTTGACATCTCTGCAGCAGTTTCGGATAGGGGGTAACCCATATCTCACTGGAAAAATCCCATCACAGTTAGGCCTATTAACCAACCTCACCACTTTTGGTGCAGCTGCCACTGGACTTTCTGGTGCCATTCCCTCCACATTTGGGAANTTGATCAATCTCCAAACGTTGGCACTTTATGATACTGAGATTTCTGGCTCAATACCACAAGAGCTTGGGCTGTGTTCTGAGCTGAGGAATCTGTATTTGCATATGAATAAGCTCACTGGCTCTATTCCTCCTCAGTTAGGTAAGTTGCAAAAACTCACTAGCTTGCTTCTCTGGGGGAATGCATTATCTGGGCCAATCCCAGCTGAGCTTTCCAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGAACTCTCGGGTGAGATACCTGGGGATTTTGGGAAGCTGATGGTTCTGGAACAGCTTCATCTATCAGACAATTCACTCACTGGTAAGATACCATGGCAGTTGAGCAACTGCACCAGCCTTGCCACTGTTCAGCTTGACAAGAACCAGTTATCAGGTACAATTCCATGGGAGGTTGGAAAATTGAAGCTTTTGCAAAGTTTTTTCTTGTGGGGTAATCTAGTTTCTGGGACCATACCATCCTCTTTTGNGAACTGCACAGAACTCTATGCACTTGACCTTTCAAGGAACAAGCTAACAGGTTCTATCCCAGAAGAGATTTTCAGCTTGAAAAAGCTGAGCAAGCTTCTGCTTCTGGGAAATTCACTGACAGGAAGGTTGCCACCAAGTGTTGCAAACTGCCAGTCCTTAGTGAGGTTGAGGGTTGGGGAAAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGGAAATTGCAGAATCTGGTGTTTCTTGACCTGTACATGAATCATTTCTCTGGAAGCTTGCCAGGGGAGATTGCCAACGTAACAGTTCTTGAGCTTCTAGATGTGCATAACAACTACCTCACTGGGGAAATTCCATCTCTGATTGGGGACCTTGAGAATCTGGAGCAGCTTGATCTCAGTCGAAATGGTTTGACAGGTGAAATCCCTTGGAGCTTTGGAAACTTGAGCTATCTGAACAAGCTCATCCTCAACAATAATTTGCTGACAGGATCAATCCCAAAATCCATTAGAAACTTGCAGAAGCTAACTCTGCTGGATTTGAGTTATAACAGCCTCTCTGGTAGCATACCCCCAGAGTTTGGTCATGTTACAAGCTTAACCATCAGTTTGGACTTGAGCTCAAATGCATTTACAGGTGAAATCCCAGACTCAATGTCTGCTTTGACACAATTACAATCACTGGACCTTTCTCACAACATGCTTCATGGAGGAATTAAGGTTCTGGGTTCTCTCACTAGTCTCACTTCCCTCAACATCTCCTACAACAACTTCTCAGGTCCTATCCCGGTAACTCCATTCCTCAGAACTCTATCTTCTAGTTCATATCTTCAGAACCCTCATCTATGTCAGTCCATTGATGGGACTACATGTTCTTCAAGTCTGATTAGAAGAAATGGTTTAAAATCTGCAAAAACCATAGCTTTGATCACGATAGTCCTAGCCTCGGTTACCATAGTTGTCATTGCATCCTGGATTCTAGTGACTCGTAATCACAGGTACAATGTTGAGAAGACTTTGGGGGCATCAGCTTCCACACCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAAAAACTGAACTTCAGCATAGACAACATCTTGGACTGCCTGAAGGATGAGAATGTGATTGGAAAGGGTTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGAGAGCTGATAGCAGTGAAGAAGCTTTGGAAAACAAACAAAGGAGATGAAATGGTGGATTCTTTTGCTGCTGAGATTCAGATTCTTGGGTACATCCGGCATAGGAACATTGTGAAGCTCCTAGGTTACTGTTCTAACAGGAGTGTTAAGCTTCTTCTGTATAACTACATCCCAAATGGTAATCTACGACAGCTTTTGGAAGGGAACAGGAACCTGGACTGGGAAACCAGATACAAGATTGCTGTTGGGTCAGCTCAGGGTCTGGCTTACCTTCATCATGATTGTGTCCCTGCAATTCTTCACAGGGATGTCAAGTGCAATAATATACTTCTAGATTCCAAATTTGAGGCTTGTCTTGCAGATTTTGGCCTTGCAAAGCTAATGAATTCACCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGAGTATGGCTACTCCATGAACATAACAGAGAAGAGTGACGTGTACAGTTATGGAGTGGTTTTGCTAGAGATACTAAGTGGGAGAAGTGCTGTTGAATCCCATGTTGGGGATGGGCAACACATAGTTGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTGTATCAATACTAGATACAAAGCTGCAAGGTCTGCCAGATCAAGTTGTGCAAGAGATGCTTCAAACACTTGGGATTGCTATGTTCTGTGTAAACTCTTCCCCTGCAGAACGCCCCACTATGAAGGAAGTGGTTGCACTGCTAATGGAGGTGAAGAGCCAGCCTGAGGAGATGATGGGGAAGACCTCTCAACCTCTAATAAAACAGTCCTCAACTCAAAGCTGA

Protein Sequence

>Glyur000197s00010086.1
MENTVPHSVTTLLFSFLFFCLTLTKIQVTCLSPDGQALLSLLSAAGPAAKSSPSVLLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNVSGSIPPSFGQLSHLQLLDLSSNSLTGSIPAELGSLSSLQFLFLNSNRLTGTIPQLLANLTSLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGKIPSQLGLLTNLTTFGAAATGLSGAIPSTFGXLINLQTLALYDTEISGSIPQELGLCSELRNLYLHMNKLTGSIPPQLGKLQKLTSLLLWGNALSGPIPAELSNCSSLVIFDVSSNELSGEIPGDFGKLMVLEQLHLSDNSLTGKIPWQLSNCTSLATVQLDKNQLSGTIPWEVGKLKLLQSFFLWGNLVSGTIPSSFXNCTELYALDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLTGRLPPSVANCQSLVRLRVGENQLSGQIPKEIGKLQNLVFLDLYMNHFSGSLPGEIANVTVLELLDVHNNYLTGEIPSLIGDLENLEQLDLSRNGLTGEIPWSFGNLSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNSLSGSIPPEFGHVTSLTISLDLSSNAFTGEIPDSMSALTQLQSLDLSHNMLHGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFLRTLSSSSYLQNPHLCQSIDGTTCSSSLIRRNGLKSAKTIALITIVLASVTIVVIASWILVTRNHRYNVEKTLGASASTPGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKTNKGDEMVDSFAAEIQILGYIRHRNIVKLLGYCSNRSVKLLLYNYIPNGNLRQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEACLADFGLAKLMNSPNYHHAMSRVAGSYEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQVVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSQPEEMMGKTSQPLIKQSSTQS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	117648	121263	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010086.1	PF08263.7	LRRNT_2	32	76	8.50E-11
Glyur000197s00010086.1	PF13855.1	LRR_8	106	164	5.10E-07
Glyur000197s00010086.1	PF00560.28	LRR_1	347	368	0.65
Glyur000197s00010086.1	PF00560.28	LRR_1	421	439	0.44
Glyur000197s00010086.1	PF13855.1	LRR_8	537	597	4.20E-08
Glyur000197s00010086.1	PF13516.1	LRR_6	633	650	1
Glyur000197s00010086.1	PF13516.1	LRR_6	656	671	0.35
Glyur000197s00010086.1	PF00069.20	Pkinase	789	1050	2.80E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.112
SRR1783600	control	0.094
SRR1783602	moderate drought stress	0.092
SRR1811619	moderate drought stress	0.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.033
DRR006520	Root Summer glycyrrhizin high producing strain	0.023
DRR006521	Root Winter glycyrrhizin high producing strain	1.496
DRR006522	Root Winter glycyrrhizin high producing strain	1.428
DRR006523	Root Summer glycyrrhizin low producing strain	0.136
DRR006524	Root Summer glycyrrhizin low producing strain	0.136
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.057
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.057

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.463
SRR2868004	Drought Stress (root)	3.207
SRR2967015	Control (root)	4.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.103
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.055
SRR9715739	Root	0.119
SRR9715742	Root	0.060
SRR9715743	Root	0.057

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.726
SRR8749028	MeJA induced 9h	1.257
SRR8749029	MeJA induced 9h	0.879
SRR8749030	Uninduced	0.111
SRR8749031	Uninduced	0.047
SRR8749032	Uninduced	0.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.358
SRR8400027	Control - Root	0.321