Gene detail

Gene detail information of Glyur000197s00010084.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06240.1	3.00E-26	F-box family protein
NR	XP_004496419.1	0	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	6.00E-37	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A072VPB6\|A0A072VPB6_MEDTR	6.00E-143	F-box protein interaction domain protein {ECO:0000313\|EMBL:KEH43491.1}

Sequence

Transcript Sequence

>Glyur000197s00010084.1
ATGGCNGGTGATGATATTGATCAGATTGAAGAACACTTACACACTGGCCGCTCGATGAAGCGTTGCCACGACTATCAAAATGACANCGTTTTGGCTCAACCTGTGGTCGAAACCACCGCCAAGAGGCACCGGCCTCTTTCTCCGATCGGCGACGAATCTNTTTCCCGGCGGCCACCGCCTGTGTTGCCGGACGACCTCATCGTCGAGATCCTCCTCAGGCTTCCAGTGAGATGCCTNCTACAACTCAGGTGCGTTTCCAAATCATGGAAAACCCTAATCTCCGATCCCCAATTCGCAAAGAACCACCTTCGCCGCTCAACCGAGGATCTAACCATGACCCACCAACGATTGGTCTCTTCCATCATCACCCAACACTGCAAAATCGTATCTTACCCCGTGAAGTCATTGTTCGAATACCCGTTAACCCCTTCTAAAGCCGTTAGCACCATGATGAGGCGAAAGTACCATATTCTAGGTTCATGCAATGGGTTACTTTGTTTATATGATATCCACCAAGGTTGTGTAAGATTGTGGAACCCNTGTACCAGGTTGAAATCCAAAAGATCTCCAATCGTTGTTCGCCCTGATGGGATTATCACTTACCATGGNTTTGGCTATGATCAAGTTAATGACAAGTACAAGTTGCTAGTAGTTGTGGAGGACTTAAATGAAACTGTGACCAAAGTTTATACCTTTGGTTCAATTTCTTGGATAACGATTCAGAATTTCCCGTGTGCTCCCACTAGGTGGTCAGGGAAATTTGTGAGTGGCACTCTGAATTGGGTAGCTAAAGGAGGTGTTAGTTCTGATCAATGGGTGATTCTCTCCTTTGATCTGGAGAAGGAGACTTATGGTGAAGTGTTGCTACCTGAACAAGATGGTGTCAGCCTCCGCAACCCTGTGCTGGATGTATTGAGTAACTGCCTNTGTGTGTGTTTTGATTCTAACAAGACTCATTGGGCTGTGTGGTTGATGAAGAAGTATGGAGTTGCAGAGTCTTGGACTAAGTTGATGATGATCCCTCATGAGAAGTTCAGGGTTTCTACATGGACACCTCCTCTTGAACCCTTGTGCCTCTCGGAAAATGGTGTTCTTCTGGTGAGAACTATGTATTCTATATTGGTTCTGTATGACTCAAACAATGGTAGTTTGGATTATACTAGGATTTGGAGCAAACGTGGGTTGGATCTACATGTTTACCATGAGAGTCTGGTATCACCACCTTGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	110914	112143	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010084.1	PF00646.28	F-box	62	99	6.20E-09
Glyur000197s00010084.1	PF07734.8	FBA_1	255	345	7.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.625
SRR1783600	control	16.405
SRR1783602	moderate drought stress	19.216
SRR1811619	moderate drought stress	20.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.970
DRR006520	Root Summer glycyrrhizin high producing strain	11.663
DRR006521	Root Winter glycyrrhizin high producing strain	21.578
DRR006522	Root Winter glycyrrhizin high producing strain	20.489
DRR006523	Root Summer glycyrrhizin low producing strain	9.526
DRR006524	Root Summer glycyrrhizin low producing strain	10.060
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.617
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.641

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.996
SRR2868004	Drought Stress (root)	17.933
SRR2967015	Control (root)	18.293

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.910
SRR9715740	Leaf	8.360
SRR9715741	Leaf	8.673
SRR9715739	Root	16.545
SRR9715742	Root	9.813
SRR9715743	Root	10.674

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.152
SRR8749028	MeJA induced 9h	21.714
SRR8749029	MeJA induced 9h	10.934
SRR8749030	Uninduced	8.738
SRR8749031	Uninduced	10.727
SRR8749032	Uninduced	13.751

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.005
SRR8400027	Control - Root	10.152