Gene detail

Gene detail information of Glyur000197s00010082.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23880.1	1.00E-28	F-box and associated interaction domains-containing protein
NR	XP_004496419.1	6.85E-86	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum]
Swissprot	tr\|Q9LIR8\|FBK67_ARATH	2.00E-38	F-box/kelch-repeat protein At3g23880
trEMBL	tr\|A0A072V7G8\|A0A072V7G8_MEDTR	2.00E-82	F-box protein interaction domain protein {ECO:0000313\|EMBL:KEH37762.1}

Sequence

Transcript Sequence

>Glyur000197s00010082.1
ATGGCGCGCGAGAACGACGCGCCGCCACAGCCACAGTTCCCCCCAATCCCATGCGAGCTCGTCTTCGAAATCCTCACAAGGCTCCCCGTGAAGTCCCTGATGCGGTTCAAGTGCGTGTGCAAGCAATGGAACTACATGATCTCCGACACCCACTTCGCAAAATCGCACCTTTTTAGGTCCACCGTGGACCCCACCTTGACCCGCCACAGGTTACTGCTACCCACCAGAACCGGCCAAGGCGAGGTGATGTCTTGTTCCGTGAAGCCCTTGTTATTCAACGACCCTTTAGCATTAACCTCTCCTGAGAGTGTTGACTTCATGTTGAGACACAAGTACCAAATCATTGGATCCTGCAATGGGTTGGTTTGTTTGGCTGATTTCAGAAATGGGCATGTTCGGTTGTGGAACCCTTCTACTAGGTTGTTGTCTAGAAAATCTCCTTTTATGGATGTGGATGATGATGATGATGACATGGCAATTTGTCATGGTTTTGGTTATGATCATGTCAGTGGCAAGTACAAGGTTGTGCTTGTTTTTCCTGATCCTTGGTTTGATAATGTTCACAGAACTGTTACTAAGGTGTACACATTTGGTGATAGTTCTTGGAAGACAATTCAGAATTTGGGTTACCTTGGTTATCCCAAAAATGTGTTGGGGAAATTTGTGGGTGACACTTTGAATTGGGTGGTGAATGGAGTGAGTGATGTCACTCCTCATCAATGGGTAATCCTCTCTTTTGACANGAGAAAGGAGGTGTTTCAGGAAGTGTTGCTACCTGATTTTGGTGATGACAACCCTGAGGAACCTATACAAGCGGTTCTGAAAGATTGCCTTTGTGTTTGCTATGATCATGAGGAAACCCATTTGGTTGTGTGGCTGATGAGGGAATATGGAGTTAGAGAGTCATGGATGAAATTGATGGTGATCCCTCATGAGGAGCTTCAGATTTTTGGGTTTGTGCCTTATATAGAGCCATTGTGCATGTCAGAGAATGGTATGGTTTTAGTGTATACCACCTTTGTTAGGGCACTTGTGTATGACTCAAAGGTAGGCAGGTTAGAGTATCCTAACATTCAGAGTGACAAGGTTTGGAATGAACAATTTGTTTATGTTGAGAGCCTGTTTGTGCTGTTTGCTTTTGCTTTATGTATTGATGATGTTTTTGTTGAAGATTTCACCAATGCTCATAGTGACACTCTAATGCTTAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	106416	108651	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010082.1	PF12937.2	F-box-like	16	52	5.60E-07
Glyur000197s00010082.1	PF07734.8	FBA_1	234	329	3.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.220
SRR1783600	control	4.155
SRR1783602	moderate drought stress	6.439
SRR1811619	moderate drought stress	6.412

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.537
DRR006520	Root Summer glycyrrhizin high producing strain	4.135
DRR006521	Root Winter glycyrrhizin high producing strain	12.829
DRR006522	Root Winter glycyrrhizin high producing strain	12.576
DRR006523	Root Summer glycyrrhizin low producing strain	2.865
DRR006524	Root Summer glycyrrhizin low producing strain	2.716
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.782
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.165

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.718
SRR2868004	Drought Stress (root)	8.121
SRR2967015	Control (root)	12.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.319
SRR9715740	Leaf	12.081
SRR9715741	Leaf	9.140
SRR9715739	Root	4.064
SRR9715742	Root	2.735
SRR9715743	Root	2.136

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.579
SRR8749028	MeJA induced 9h	8.379
SRR8749029	MeJA induced 9h	4.563
SRR8749030	Uninduced	2.203
SRR8749031	Uninduced	4.098
SRR8749032	Uninduced	4.751

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.702
SRR8400027	Control - Root	4.398