Gene detail

Gene detail information of Glyur000197s00010078

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71770.2	0	poly(A)-binding protein 5
NR	XP_004496416.1	0	PREDICTED: polyadenylate-binding protein 3-like isoform X2 [Cicer arietinum]
COG	YP_005008913.1	5.00E-12	RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Swissprot	tr\|O64380\|PABP3_ARATH	0	Polyadenylate-binding protein 3
trEMBL	tr\|I1NH63\|I1NH63_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G31120.1}

Sequence

Transcript Sequence

>Glyur000197s00010078.1
TGATCGTCCCTTCCCATTCCCTCTCCCTCTGTTCTCTACTTTCGGAGGCAACAAAAAAAAAAGGGAAGGAGAAAATAACAATAATCCCCCCCGAAANGAAAAATATATAATATCCCAAAAACTTCAAAAATAGGGTTTGGTTATTTTATTTTTTCCTAGACTAGATTTCCATTCACAGAGGAAATCACAGTTGCTACTACTCACTCCTGCTTCTCGTTCTCAGTGCTGGTTTTTTTGTTTTTCAAATTTTCGGTTTTTTTTGCGGGAAAAAGGGAATGGCGGCGGCGATTTCCTCACCGATGGCTCAGTCTGCGACGGCTGTGACTCCTGCGACGGCGGCATTGGTCGGAGGACCATTTGCGAATGCGTCGCTGTACGTAGGCGATCTCGAAGGGAATGTGAATGAGGGACAACTGTATGATCTGTTCAGTCAGGTGGCTCAGGTTGTCTCGATTAGGGTTTGCAGGGATCAGACCAGGCGATCCTCTCTCGGTTACGCTTACGTCAACTTCGCCAACGCTCAGGATGCGGCCAATGCCAAGGAACTTATGAACTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAACGGGATCCGAGTATTCGGAAAAGTGGATATGCCAACGTGTTCATTAAGAATCTGGACANGTCAATTGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGCACTGTGCTTTCCTGTAAGGTGGCTCTTGATGGCAGTGGTCAATCAAAAGGGTACGGTTTTGTACAGTTTGAAAATGAAGACGCTGCACAGAGTGCCATCAAACAGTTGAATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGACTTTTTGTTCGCCACCAGGAAAGGGCTCAAGCAAATGGATCACCCAAGTTCACTAATGTGTATGTGAAAAATTTGTCTGATACAGTTACTGATGAGGACCTGAGGCAGCTATTTGGTCCCTTTGGTACGATAACAAGTGCAACGGTTATGAGAGATGGGAATGGGAGGTCTAGATGTTTTGGTTTTGTGAATTTCCAGAATCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACTACTATCCATGATGACAAGGTTTTATATGTGGGGAGAGCTCAGAGGAAAGCAGACAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAGAAGTAGCAGATTTGAGAAATTACAAGGTGCTAATTTGTACTTGAAAAATCTCGATGATGGTTTCAGTGATGAAAAGTTGAGGGATTTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGGTGATGATGGATTCACATGGGCATAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTACACCTGAGGAAGCAACTAAAGCTTTGAATGAAATGAATGGAAAGTTGATTGGACGGAAGCCTCTGTATGTTGCTGTTGCCCAGCGAAAAGAAGAGAGAAAGGCTCGTTTGCAGGCTCATTTTGCTCAAATCCAAACACCTAGTGCAATAGCACCTCTGCCTGCAGGAATTCCTGGATATCACCCAGGGGCACCAAGGCTTGCCCCTCAGCAGTTGTATTTTGGTCAAGGTACACCTGGCTTCATACCACCTCAGCCTGCCGGATTTGGTTTCCAGCAGCAAATCATGCCTGGAATGCGGCCCGGTGTTGCTCCAAATTTCATTATGCCATACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGGATGGGTGTTCGACGAAATGGAAACATCCAACAGGTGCAGCAGAACCAAATGCTACATCGTAACTCCAATCAAGGGTTTAGATACATGGCCAACAATCGAAATGGCATGGATCCATCTGTAGTTCCTCAAGGTCTAGTGGGTCAAATGATGCCAATGGCCTTTGATGGTTCTGGAGTTACGGCAGCTCCTATTGATAACCAGCATCCTGGGGCATCATCTACCACACTTGCCTCAGCTTTGGCTTCTGCTACCCCTGAAAATCAGCGTATGATGTTGGGTGAACACCTATATCCCCTTGTGGACCGTCTTACACCAAACCAACATACAGCAAAGGTGACAGGGATGCTGCTTGAAATGGACCAGTCAGAGGTAATCCATCTNATCGAATCTCCTGAGGACCTGAAGATAAAGGTGTCTGAGGCATTGCAGGTCCTTCGTGAAGCTGCATCAGGCTCTGAAGTTGGTGATCAGCTTGGCTCGCTGTCATTGAATGAATGAAGTAATCTCAGTTGTAGTGGTAGATATGTTGCATCCTTGTCATATGGGAGCCACTTTTTTGGGCTTAATTAGCTAGTATTATTCTGGGGTCTTAGACTATTTTAATTTATCAGAATCACATTTTCTTTTTTTGCGGGATAATTGATTGGTGAGTCCGTGAGTTGACATGGAGTGATTCAAGGNT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	94536	98678	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010078.1	PF00076.17	RRM_1	33	103	1.80E-16
Glyur000197s00010078.1	PF00076.17	RRM_1	121	189	1.10E-19
Glyur000197s00010078.1	PF00076.17	RRM_1	212	279	4.70E-23
Glyur000197s00010078.1	PF00076.17	RRM_1	316	384	6.60E-21
Glyur000197s00010078.1	PF00658.13	PABP	559	629	4.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.700
SRR1783600	control	21.730
SRR1783602	moderate drought stress	10.248
SRR1811619	moderate drought stress	10.250

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.339
DRR006520	Root Summer glycyrrhizin high producing strain	24.072
DRR006521	Root Winter glycyrrhizin high producing strain	11.076
DRR006522	Root Winter glycyrrhizin high producing strain	10.697
DRR006523	Root Summer glycyrrhizin low producing strain	13.816
DRR006524	Root Summer glycyrrhizin low producing strain	13.635
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.366
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.285

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.557
SRR2868004	Drought Stress (root)	14.023
SRR2967015	Control (root)	13.944

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.819
SRR9715740	Leaf	3.001
SRR9715741	Leaf	2.117
SRR9715739	Root	18.347
SRR9715742	Root	18.762
SRR9715743	Root	17.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.285
SRR8749028	MeJA induced 9h	21.420
SRR8749029	MeJA induced 9h	31.882
SRR8749030	Uninduced	7.825
SRR8749031	Uninduced	17.329
SRR8749032	Uninduced	12.386

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.991
SRR8400027	Control - Root	20.580