Gene detail information of Glyur000197s00010075 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22750.1 | 8.00E-58 | |
| NR | KHN03699.1 | 2.84E-133 | hypothetical protein glysoja_046448 [Glycine soja] |
| trEMBL | tr|K7N402|K7N402_SOYBN | 1.00E-133 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G31130.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00197 | 81828 | 92130 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000197s00010075.1 | PF07343.6 | DUF1475 | 1 | 256 | 8.70E-93 |
| Glyur000197s00010075.1 | PF07343.6 | DUF1475 | 264 | 436 | 1.00E-74 |
| Glyur000197s00010075.2 | PF07343.6 | DUF1475 | 1 | 242 | 2.00E-99 |
| Glyur000197s00010075.2 | PF07343.6 | DUF1475 | 250 | 422 | 1.10E-74 |
| Glyur000197s00010075.3 | PF07343.6 | DUF1475 | 1 | 131 | 7.10E-41 |
| Glyur000197s00010075.3 | PF07343.6 | DUF1475 | 141 | 208 | 6.30E-28 |
| Glyur000197s00010075.3 | PF07343.6 | DUF1475 | 208 | 381 | 1.10E-74 |
| Glyur000197s00010075.4 | PF07343.6 | DUF1475 | 1 | 117 | 1.50E-47 |
| Glyur000197s00010075.4 | PF07343.6 | DUF1475 | 127 | 194 | 3.20E-28 |
| Glyur000197s00010075.4 | PF07343.6 | DUF1475 | 202 | 374 | 7.00E-75 |
| Glyur000197s00010075.5 | PF07343.6 | DUF1475 | 1 | 131 | 2.80E-41 |
| Glyur000197s00010075.5 | PF07343.6 | DUF1475 | 141 | 209 | 5.40E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.825 |
| SRR1783600 | control | 2.072 |
| SRR1783602 | moderate drought stress | 1.934 |
| SRR1811619 | moderate drought stress | 1.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.115 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.504 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.759 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.059 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.890 |
| SRR2868004 | Drought Stress (root) | 9.270 |
| SRR2967015 | Control (root) | 8.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.095 |
| SRR9715740 | Leaf | 58.037 |
| SRR9715741 | Leaf | 40.511 |
| SRR9715739 | Root | 1.934 |
| SRR9715742 | Root | 2.226 |
| SRR9715743 | Root | 2.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.761 |
| SRR8749028 | MeJA induced 9h | 5.304 |
| SRR8749029 | MeJA induced 9h | 5.432 |
| SRR8749030 | Uninduced | 5.088 |
| SRR8749031 | Uninduced | 4.226 |
| SRR8749032 | Uninduced | 3.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.792 |
| SRR8400027 | Control - Root | 9.711 |