Gene detail

Gene detail information of Glyur000197s00010073

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09720.1	6.00E-96	RAB GTPase homolog G3A
NR	XP_004496410.1	3.42E-136	PREDICTED: ras-related protein Rab7-like [Cicer arietinum]
COG	YP_008431664.1	3.00E-20	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q43463\|RAB7_SOYBN	3.00E-136	Ras-related protein Rab7
trEMBL	tr\|M5W8B5\|M5W8B5_PRUPE	1.00E-135	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03050.1}

Sequence

Transcript Sequence

>Glyur000197s00010073.1
ATAAATCAATTTATTTTTTAATCAGTAAAGAGACATGCCATTTATGCTTGAATTAAAGATTTGTGAGGATATTTTTAGTAATCTAACTAAATTCTAACTCAATAACTAACATAAAAACTGAGCAAAAAAAAAAATTTGGTTTGTCGTCTTTTACATTTTTTTTGGGGGTGAAATATTGTGAGAAGTGGAGGAAAGATTAGANCAGAAAGCGATCGACAGTGGCATCCAAACGAATCACCCAATTCAAAGAATCGATCAAACAAAAAGGAGCTTCGACGCAAAGCTCAATCGGTTGCATCCCCACGGTAACCAGCTATGTCATTGCGCAGGCGAACCTTGCTCAAGGTCATTGTCCTCGGCGATAGCGGCCTCTGTGGACCATTAACTAAATTGTATAGATATGTGCACAAGAAGTTTAGTCAGCAATATAAGGCTACAATTGGTGCCGATTTTGTCACTAAAGAACTCCAGATTGACGACAGACTAGTCACTCTACAAATATGGGACACTGCTGGACAAGAGAGATTCCAAAGTCTTGGAGTTGCATTTTATAGAGGGGCAGATTGCTGTGTTCTAGTGTATGATGTGAATGTGANGAAGTCGTTTGATAACCTTGACAACTGGCACGAGGAGTTTCTCAAACAGGCAAACCCTCCTGATACAAGGACATTTCCATTTATATTGCTTGGAAACAAGATTGATATTGATGGTGGTAATAGTCGAGTGGTTTCTGAGAAGAAAGCAAAGGACTGGTGTGTTTCAAAAGGGAACATTCCCTACTTCGAGACATCAGCAAAAGAGGATTACAATGTTGATGCTGCATTTCTGTGTATTGCCAAGACTGCCCTGTCCAATGAGCACGAACAGGACATATATTTTCAAGGGATTCCTGAGGCAGTTCCGGAGAATGAGCAGACGGGTGGATGTGCATGCTGATATGGAAATACTGAATAATTTTAGTCACTCCCCTTAATGCCGTGTTTCATANTCTTCAAATTCTTTTTGGTCACATATAGTGTACACTGTATGCCATGCCATGATTGTGCCAGTGAATTGTGTACCTTGAATGATGTTTGCCATTTTGATAATTTGTAATATTGTAGTCCTGTTTTGTGAAGGATGAGCTTGAGAATGTTGCACTCGTAGGAAAAACNTGTTCCATTGATTTACTACGGATTATATAGGCTTAAACTAACTTTTTTCCCCTTTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	76922	80626	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010073.1	PF00071.17	Ras	10	177	2.80E-49
Glyur000197s00010073.2	PF00071.17	Ras	10	112	4.60E-33
Glyur000197s00010073.3	PF00071.17	Ras	19	103	4.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.171
SRR1783600	control	11.288
SRR1783602	moderate drought stress	18.877
SRR1811619	moderate drought stress	18.387

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.328
DRR006520	Root Summer glycyrrhizin high producing strain	22.404
DRR006521	Root Winter glycyrrhizin high producing strain	8.200
DRR006522	Root Winter glycyrrhizin high producing strain	8.124
DRR006523	Root Summer glycyrrhizin low producing strain	9.532
DRR006524	Root Summer glycyrrhizin low producing strain	9.008
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.370
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.731

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.896
SRR2868004	Drought Stress (root)	19.880
SRR2967015	Control (root)	18.589

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.290
SRR9715740	Leaf	3.908
SRR9715741	Leaf	3.451
SRR9715739	Root	4.603
SRR9715742	Root	7.392
SRR9715743	Root	7.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.799
SRR8749028	MeJA induced 9h	22.189
SRR8749029	MeJA induced 9h	24.995
SRR8749030	Uninduced	17.025
SRR8749031	Uninduced	14.629
SRR8749032	Uninduced	10.473

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.449
SRR8400027	Control - Root	24.646