Gene detail

Gene detail information of Glyur000197s00010065.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69640.1	7.00E-87	sphingoid base hydroxylase 1
NR	XP_006588453.1	1.32E-176	PREDICTED: uncharacterized protein LOC100795462 isoform X1 [Glycine max]
COG	NP_250588.1	2.00E-12	hypothetical protein PA1897 [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|Q9AST3\|SBH2_ARATH	8.00E-121	Sphinganine C(4)-monooxygenase 2
trEMBL	tr\|I1LDA9\|I1LDA9_SOYBN	5.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G36370.1}

Sequence

Transcript Sequence

>Glyur000197s00010065.1
GGTTCAATCATTTTCTTGTCTCCCAATCACGTTTCTATTCTCTTTCCGGGGGAGAGAGTGTGAGTGTGCACGGGAAGGGAGAGAAGATTAGGGCAGAAAAACCCCAAAAATAATAAATAATAATTCATTCAAGTTTGAAATAAAAATTCAAACTTTTGAAGATTTTTGGAATCTCACAACTGTCACCCAGTGTTTATCCATACAGATTAGACCCTAGATCTGATCGAGAAATGTGCTTTTTCAAAAGGGTTTCGTGGGTGAAACCGTTTTGATCATCTGGGTGTCTTGGCTGTGAAGGAACTTGTTCAAGTTGAGATCTCTAACTGTAATGCAGCTTTGACTTGCCGCATTTTGTTTTCTGGGTTGGGTTTTTTTTGCTTAAAATTGAGTTGTTTCCACTTTTAAGTTCATATAATGGTTTTCTGGGAAGGATATGTGAGTGATGAATTGATGGGCACCTTTGCCCCTATCGTGGTGTATTGGATATATGCTGGATTTTATCACTTGCTGCCACCTTTAGATAATTATCGGTTGCATACTAAGAAGGATAAGGAAGACAAGAATTTGGTGCCCTTTAAAGCAGTTGTGAAGGGTGTTTTGCTTCAGCAGCTTGTTCAGGCAATTGTTGCACTTGTCTTGTTGACGACAACAGCAAATGCATCCGGGGTTATAGTGCAGCCTTCTATCCCCAAGCAAATTTTGCAGATCCTTATCGCGATGTTTGTGATGGATTCATGGCAATACTTTGTGCATCGGTACATGCATCAGAACAAGTTNCTATACCGCCACATCCACTCCCAGCATCACAGGCTGGTTGTTCCTTATGCAATAGGAGCCCTTTACAATCACCCCATTGAGGGTCTTCTACTTGACACTGTGGGTGGAGCCATCTCATACCTTGTCTCAAGGATGACCGCGAGAACGGCCGTTGTATTCTTCTGCTTTGCTGTTGTGAAAACCGTTGATGATCACTGCGGACTGTGGTTGCCAGGCAACATCTTCCATTTATTTTTCCAGAATAACACAGCTTACCATGACATTCACCATCAACTACAAGGGCTGAAATACAATTATTCTCAGCCATTCTTTCCCATATGGGATAAACTTCTGGGGACATACATGCCTTTCAATCTTGTAAAGCGGCCTGAAGGGGGTTTTGAGGCAAGGCCTGCAAAGGACTAGTTACATTTTAACTGTCATGGCACCATTTTCCTTGGAACCAGAGGCTTTTACTGCAGACATTTCTCGAGTTGATTGGAGCTTACTGGTTTTTTTGGTTGCTTGACAATGTTTTCAGCTCATCTTATTACAGTAGGTTTGCCAACCCACCTTTTGTAGCATAACTGTGATGTGGTGGTTAACGAGCTTTTCATTATTATCATGTATTTAAGAAACAATTTTTTTTCANGTGTAAGTTGCTAAAAGAGTACCAGGTTTTTAAGCTACCATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	51708	54742	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04713	SUR2	EC:1.14.18.5	Sphingolipid metabolism	map00600

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010065.1	PF04116.8	FA_hydroxylase	99	212	4.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.380
SRR1783600	control	35.424
SRR1783602	moderate drought stress	27.187
SRR1811619	moderate drought stress	26.666

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.484
DRR006520	Root Summer glycyrrhizin high producing strain	30.793
DRR006521	Root Winter glycyrrhizin high producing strain	6.053
DRR006522	Root Winter glycyrrhizin high producing strain	5.744
DRR006523	Root Summer glycyrrhizin low producing strain	22.229
DRR006524	Root Summer glycyrrhizin low producing strain	22.190
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.457

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.960
SRR2868004	Drought Stress (root)	35.651
SRR2967015	Control (root)	38.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.597
SRR9715740	Leaf	7.164
SRR9715741	Leaf	8.073
SRR9715739	Root	26.770
SRR9715742	Root	20.363
SRR9715743	Root	19.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.712
SRR8749028	MeJA induced 9h	22.202
SRR8749029	MeJA induced 9h	18.406
SRR8749030	Uninduced	7.174
SRR8749031	Uninduced	6.108
SRR8749032	Uninduced	9.734

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.520
SRR8400027	Control - Root	52.495