Gene detail

Gene detail information of Glyur000197s00010063.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34180.1	1.00E-88	NAC domain containing protein 16
NR	XP_004496404.1	0	PREDICTED: NAC domain-containing protein 89-like [Cicer arietinum]
Swissprot	tr\|Q84K00\|NAC78_ARATH	1.00E-46	NAC domain-containing protein 78
trEMBL	tr\|I1LDA8\|I1LDA8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G36360.1}

Sequence

Transcript Sequence

>Glyur000197s00010063.1
ATGCGTCTTTCAGGTCAATCTTTACTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAATGGTGCAAGGTCTAACCGAGCAACAAGACATGGATACTGGAAAGCAACAGGGAAAGATCGGAATGTGACATGCAATTCTCGGACAGTTGGAGTGAAAAAGACACTGGTTTTCTATGTAGGCAGAGCTCCTAATGGTGAGCGGACTGATTGGGTTATGCATGAATACATCATGGATGAAGAGGAGCTTAAGAGATGCCGGGATGTTAAGGACTATTATGTGCTTTGCAAGGTTTACAAAAAAAGTGGACCTGGNCCTAAAAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGACTGGGTGGATGATGCTGTTGTAGATTTTAATGTTAACTCAGCTGACCTGGAGGCTTCACCTGCTGTCACTGAGCCGGAGGCTCCTNCTGCTGTCACTGACACTGTTAAAGATCAGCTGCAGCCTCTGTTTGATGATGAAATTGAAGAGATCCTTAAAGGAATTTTGGACGATGAGCTTGTTCTTGATCAGCAACATGTGAATGGTTATACTGACTTTCCTCAGGTTGTTGTTGAAGAAACAGAAAGTACGATCATGGGTCAATTCTCTGAGAATGTGATATTCCCTGAGCCAAGCGGAGTTTTGCAGTCTAGCAGTCAGCATTATGATGTGCAGCCCGACTTTGACTTCAATCAGTCTGTTACTTCTCACTTGCATATTTCCGAAGCACCTGAGGTCACTTCTGCTCCCAACATTGAAAGTGNGGAGGGGCTTCTCTTTCACGAGGATGGCTTCTTGGAAATTGATGATCTCATTGATACTGAACCTATATTGTCAAATTCAGAAAAGCCTGNGGAGAACTTGCAGTTTGAAGATGGGTTAAGTGAATTTGATCTATACCAAGATGCAGAGATGTTTCTTCGTGACTTGGGGCCAATTACTCATGAAACAGTTTCACATGGATATATGAATACNGTTAACAGCAATATTGAAAATCAGAATTACCAGTTGCTGCCCAATCCAGAAGATGTCAATCAAACTGTTGATGAATTCTGGATGCATGGTGAAAATAACACCTTNAGTCCAGTAGAAGGCTATGATGGTTCTTTCTCTCTATCAAATCCAGGTGTTGTATGTGAATCTGTCAGCTTTCCTACTGAAGGCGATGGAAACCAAAGTAGAACCGCGGAAGATGTTACTACGAGTAGATTCACCTCTGCTCTCTGGGCCTTTGTTGAATCGATACCTACTACTCCTGCATCAGCTGCTGAAAATGCTTTGGTGAACCGGGCTTTGAATCGGATGTCTAGCTTCAGCAGGGTGAAGATCAACTACACCAACGTTGCTGCAGGTAAAGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGAGTTTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGATGCNTCTCTCCTTGAATATGTAGATCCAAAGTTTTGCTGCTGTATATGTTTTGTCTGGGATCTCCCCAGGATGACTCAAAACAGTACTCTTCTAACATATTCTGAATATAATATAAGAAAAATATTTTATTCTTTGTTAACTTTGNACTCAAGGTAAGGTTTAGGGTAGCCAAATTCAGCCTTAATTCAAGTGAAGGAAGGGGCTGTATGGGAATTGGTAACTTGATTCACAAAAATCTCACCAAGTCCCCAAACTTGCTTAATCTATCTTTTTGTTTGTTTATTTAGTTTGGTTTTTTGGGTCCCATGTAATATCTTGTTTTGATTAACTCGGAGTGCATTCCATTTTGGAGATTGATTGTACTGTGGGATAAGATCACATTTTGTGAAATGTGTACATAGATGTATTGTGTATTTGTAATAATCTTTTATTGGTAGTAACGTCTTTAGCATTAGCACNATATTGTTATTGTCCGTACTTTTGGTAAATGAATATGCTGTGTCCTGAATAAGTGTAAGTAATGAGTGATTGCTCTCTCATCGGGGTTGTAAACTTGTAATGTTCGTGCCCAAAATCCAAATGAGGATGATTTGGAGACAATCAAGACGCTGCATATGGGANAAGTAGTTTAATTTTGCTCCGTGTAAAATATTTTTGACGCTTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	41399	44922	-

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010063.1	PF02365.10	NAM	9	85	5.70E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.448
SRR1783600	control	12.520
SRR1783602	moderate drought stress	15.873
SRR1811619	moderate drought stress	15.599

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.289
DRR006520	Root Summer glycyrrhizin high producing strain	34.185
DRR006521	Root Winter glycyrrhizin high producing strain	52.790
DRR006522	Root Winter glycyrrhizin high producing strain	51.671
DRR006523	Root Summer glycyrrhizin low producing strain	55.914
DRR006524	Root Summer glycyrrhizin low producing strain	56.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.564
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.757
SRR2868004	Drought Stress (root)	63.229
SRR2967015	Control (root)	53.281

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.745
SRR9715740	Leaf	51.193
SRR9715741	Leaf	59.168
SRR9715739	Root	31.270
SRR9715742	Root	55.085
SRR9715743	Root	52.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.730
SRR8749028	MeJA induced 9h	77.652
SRR8749029	MeJA induced 9h	51.542
SRR8749030	Uninduced	46.075
SRR8749031	Uninduced	54.206
SRR8749032	Uninduced	57.009

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.700
SRR8400027	Control - Root	38.406