Gene detail information of Glyur000197s00010061 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36120.1 | 7.00E-47 | cofactor assembly, complex C (B6F) |
| NR | KEH43605.1 | 2.51E-111 | integral membrane protein, putative [Medicago truncatula] |
| COG | YP_007071830.1 | 5.00E-26 | hypothetical protein Lepto7376_2735 [Leptolyngbya sp. PCC 7376] |
| trEMBL | tr|A0A072VZW8|A0A072VZW8_MEDTR | 9.00E-112 | Integral membrane protein, putative {ECO:0000313|EMBL:KEH43605.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00197 | 29788 | 31614 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000197s00010061.1 | PF02325.12 | YGGT | 114 | 186 | 3.80E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.030 |
| SRR1783600 | control | 1.055 |
| SRR1783602 | moderate drought stress | 2.784 |
| SRR1811619 | moderate drought stress | 2.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.399 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.360 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.057 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.011 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.643 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.658 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.028 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.220 |
| SRR2868004 | Drought Stress (root) | 1.559 |
| SRR2967015 | Control (root) | 1.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.256 |
| SRR9715740 | Leaf | 54.975 |
| SRR9715741 | Leaf | 31.150 |
| SRR9715739 | Root | 0.471 |
| SRR9715742 | Root | 0.831 |
| SRR9715743 | Root | 1.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.059 |
| SRR8749028 | MeJA induced 9h | 2.562 |
| SRR8749029 | MeJA induced 9h | 1.353 |
| SRR8749030 | Uninduced | 1.594 |
| SRR8749031 | Uninduced | 1.695 |
| SRR8749032 | Uninduced | 2.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.990 |
| SRR8400027 | Control - Root | 1.540 |