Gene detail

Gene detail information of Glyur000197s00010058

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09670.1	2.00E-145	Oxidoreductase family protein
NR	XP_007143609.1	0	hypothetical protein PHAVU_007G086100g [Phaseolus vulgaris]
COG	NP_867683.1	4.00E-56	oxidoreductase [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9SZ83\|Y4967_ARATH	0	Uncharacterized oxidoreductase At4g09670
trEMBL	tr\|V7BFC7\|V7BFC7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15603.1}

Sequence

Transcript Sequence

>Glyur000197s00010058.1
CGACCAACTACCTACCACGCACACACACACACTCACAGAGTCACCACTTGTCTCCACTCCTCACTCCTCTGACCAAAATGGCGGAAGCGCTGATCCAAATCGGAGTGGTGGGCTGCGCCGACATCGCCAGGAAGGTTTCCCGCGCAATCAGGTTGGCCCCAAACGCCACCGTATGCGCCGTCGCAAGCCGTTCCGTCGACAAGGCCACCGCATTCGCCGCCGCGAACGGGCTCCCTCTGACGGTGAAGGTGTACGGGTCCTACGAGGCCCTGCTGGAGGATCCAGATGTGGACGCGGTGTACATGCCCCTTCCCACAAGCCTGCACCTCCGTTGGGCCATGCTTGCGGCCCAAAACNAGAAGCATTTGCTCCTCGAGAAGCCCGTGGCCCTCGACGTGTCTCAGTTCGACCACATCATCCGGGCCTGTGAGTCCAATGGGGTCCAGTTCATGGATAACACCATGTGGGTCCATAATCCCAGGACCGCCGCTGTGGCCCACTTCCTCAACGACCCCAACCGTTTTGGCCACCTCAAATCGGTTCAAACCTGTTTTACATTTGCTGCTGACTCTGATTATCTNAAGAATGACATTCGTGTGAAGCCGGATCTTGATGCTCTTGGTTCTCTGGGTGATCAAGGGTGGTATTGTATCAGGGCAATCCTGTTGGCTGCAAACTATGAATTGCCTAAAACAGTGATAGCCTCGNGTGAACCCGTGCTTAACAAAGATGGAGTGATCTTGGACTGTGGGGCATCTCTATACTGGGAAGATGGGAAAGTAGCAACCTTCCATTGCTCCTTCTTGGCAAACTTGACAATGGACATAACAGCTATTGGAACAAAGGGAACTCTTCATGTTCATGACTTTGTCATCCCTTATCAAGAGAAAGATGCATCCTTTTATGCTGGCACAGAAACCAGGTTTGATGATCTCGTTACAGGGTGGGCTTTGCAGCCAAGCAAGCACACAGTAAACACTGATCTCCCTCAGGAGGCTCTTTTGGTTAGAGAGTTTGCGCGTTTGGTGGGAGAAATCAAATTCAAAAACTCTAAACCTGAGAAGAAGTGGCNAACGATTAGTAGGAAAACACAACTGGTTGTGGATGCTGTGATGGCTTCAATTCAGAAGGGGTTTGAGCCTGTTCAGATTCAGGAGTGAAGGAAGAGTCTGTACTGTACTGTATCTGATTCTGCACCCTGCTCAAGTGAGGTTTTTTATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	14173	16247	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010058.1	PF01408.17	GFO_IDH_MocA	6	125	8.10E-24
Glyur000197s00010058.1	PF02894.12	GFO_IDH_MocA_C	148	251	1.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.633
SRR1783600	control	5.727
SRR1783602	moderate drought stress	6.418
SRR1811619	moderate drought stress	6.253

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.085
DRR006520	Root Summer glycyrrhizin high producing strain	4.904
DRR006521	Root Winter glycyrrhizin high producing strain	0.912
DRR006522	Root Winter glycyrrhizin high producing strain	0.842
DRR006523	Root Summer glycyrrhizin low producing strain	4.671
DRR006524	Root Summer glycyrrhizin low producing strain	4.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.601
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.612

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.744
SRR2868004	Drought Stress (root)	34.160
SRR2967015	Control (root)	38.302

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.147
SRR9715740	Leaf	1.492
SRR9715741	Leaf	0.533
SRR9715739	Root	16.153
SRR9715742	Root	0.711
SRR9715743	Root	3.635

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.343
SRR8749028	MeJA induced 9h	3.296
SRR8749029	MeJA induced 9h	4.143
SRR8749030	Uninduced	11.483
SRR8749031	Uninduced	9.496
SRR8749032	Uninduced	4.349

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.863
SRR8400027	Control - Root	50.929