Gene detail

Gene detail information of Glyur000197s00010056

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33720.1	1.00E-108	cytochrome P450, family 76, subfamily C, polypeptide 6
NR	KEH43603.1	0	cytochrome P450 family protein [Medicago truncatula]
COG	YP_005368416.1	8.00E-37	cytochrome P450 family protein [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	2.00E-165	Geraniol 8-hydroxylase
trEMBL	tr\|A0A072VQA6\|A0A072VQA6_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:KEH43603.1}

Sequence

Transcript Sequence

>Glyur000197s00010056.1
CGCCTATACAATTGCATATTATATTATATCCCAGTTGCATAATTACTACCAAACCCCAATATTAGATATCCCTTATGACCAAATTAATCATGGATATGCATAACCACCCCAACCGATGCAGAACCTATTGCAGCAGGCACATAGCAGCAGAAATTAGATAAACCCATAAGGCCACTGCCCACCGCCACAACTTGTGATATTAATTTTCACCGACGCCAAAGAGATAATTGATCAGGATGGAGGTTCACATCTTGCTGTTATTTGTCACCCTATCACTAGCCGTGATTCGGTTCTTCGTGAACCAGAACCGTAGAAGGAACGAGCCGCCCGGTCCAACCGGTCTCCCCATAATCGGAAATCTCCACCAATTAGGCCCCAAACCCCACTGCTNCCTCTCTTCTCTTGCCAAAACCTACGGCCCCATCATGTCCCTCCGCTTCGGCTCCGTCGCCGTCGCCGTCGCTTCCTCCCCCGCTGCCGCCCAAGAAATCCTCCAAAAAAACGACCAATCCTTCGCCAACCGCCCCATCCCCGAATCCGTGGCCGCCCAGCCCAACGTCGAAGACACCCTCGCCTGGGCCCACGCCGACAACCGGTGGCGCAACCGTCGCCGCATCTGCACCACCCAGATATTCACCGCCCAGCGCCTCGACCTCCTCCAACACCTCCGCCACCGAAAGGTGCAGCAGCTAGTGCAGCACCTTCGCCGCCGTGCCGCAACGGGAACGCCGGTGAACATAGGCGACGTGGCGTTTGCCACCATGCTTAACTTGGTCTCCAACACGGTGTTCTCGGAGGACATGGTGGACCCTGNGTTCGAGAGTGCCGGCGAGTTCAAGGAACTTGTGTGGAGGATCATGGAGGATGCTGGGAGGGTTAATGTCTCCGATTATTTTCCGTTGCTAAAGAGGCTGGACTTGCAGGGTGTGAAGAGGCACGTGAAGGTTTCCTATCTGAGATTACATGAGATTTTTGATCACATGATTCGAAAACGTGTTAGGGAAAGAGAGAATTTGCGTGGTGATGGTGAGTCTGGTGCGGGTGATTTCTTGGATGTGTTGCTGGATCATTGTCAACAAGAGGACGAGGGCTCTGTTTTCAGTGTTGAAAGCATCAAGCCATTGATTCTGGATTTATTTATTGCGGGAAGCGACACTTCAGGATCAACAACAGAATGGGCAATGGCAGAGCTTCTACGGAACCCAGAAGTAATGCAGAGAGCAAGAGAGGAAGTGATCCAAGTGATTGGTAGTGGCACCTCCAATGAAGTCAAAGAATCAGACATCCATAGGCTTCCATACATCCAAGCAATTGTGAAAGAAACCCTTCGCCTTCATCCACCCGTACCCCTTCTCTTGCCCTATGTTGCGGGAAATGATGTTGAAGTAAATGGCTACACCATTCATAAAGGAAGCCAAGTCTTGATAAATGCATGGTCCATTGGTAGAAACCCAGACTTTTGGGCCGATCCATTGTCATTTCGGCCCGATAGGTTTATTGGGTCCAACATAGATTTCAAGGGCCGGGATTTTGAGTATTTGCCCTTTGGTGCTGGCAGGAGGATTTGTCCTGGTCTCCCATTGGCTAATAGGATGATCAATTTGATGCTGGCTACGTTGCTACATTCTTTTCAGTGGGAGCTTCCTCAGGGGATCACTCTTGAAACGCTTGACATGAGTGAGCAGTATGGAATCACACTCAAAAAGCTTGCTCCTCTTTGTGCTGTTCCAATATCAGTATGAAACTATCTACATATATATATATATGTGTGTGTAAATTAATTAATATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00197	2884	5424	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000197s00010056.1	PF00067.17	p450	30	488	1.50E-105

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.891
SRR1783600	control	46.978
SRR1783602	moderate drought stress	55.400
SRR1811619	moderate drought stress	54.953

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.043
DRR006520	Root Summer glycyrrhizin high producing strain	23.003
DRR006521	Root Winter glycyrrhizin high producing strain	11.203
DRR006522	Root Winter glycyrrhizin high producing strain	10.842
DRR006523	Root Summer glycyrrhizin low producing strain	8.660
DRR006524	Root Summer glycyrrhizin low producing strain	8.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.494
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.421

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.398
SRR2868004	Drought Stress (root)	65.556
SRR2967015	Control (root)	62.055

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.778
SRR9715740	Leaf	2.715
SRR9715741	Leaf	2.060
SRR9715739	Root	135.051
SRR9715742	Root	71.642
SRR9715743	Root	86.949

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.218
SRR8749028	MeJA induced 9h	10.229
SRR8749029	MeJA induced 9h	3.717
SRR8749030	Uninduced	8.284
SRR8749031	Uninduced	6.516
SRR8749032	Uninduced	4.386

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.604
SRR8400027	Control - Root	50.132