Gene detail

Gene detail information of Glyur000196s00010887

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18470.1	6.00E-24	Curculin-like (mannose-binding) lectin family protein
NR	KEH19150.1	9.67E-121	cysteine-rich RLK (receptor-like kinase) protein [Medicago truncatula]
Swissprot	tr\|O64793\|Y1675_ARATH	3.00E-21	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 (Precursor)
trEMBL	tr\|A0A072U017\|A0A072U017_MEDTR	4.00E-121	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000196s00010887.1
ATGTGGTGGACTACTTCTATCATCCATGTCAAAGCAGAATATCACGACACTGACAGTTTGAAGCCAGGAGATACACTGAATGCAACAGACGAGCTATGTTCTAAACAAGGTACCTACTGCATGAGTTTCGGCCAAATATCTTCTCATAAAAACCTCACTTACCTACAAATATATGCCAGAGGAAAAGATGATTGGCGAGTGTGGGTTGCTAACAGGAACCAACCTGTTGTTGAACTTGATTCTGCAGTTTTAGTACTAGACCACTCTGGTGTACTTAAAATAGAACCCAATACTACTAGGGAACCAATAATCCTTTACTCTTCACCTCAACCAGTTGACAATAGTACCACCATGGCCACCTTTGTGTTGTGGCAGAGTTTTGATTATCCAATTGACACTTTGATCCCTGGGATGAAGCTAGGTGATACAAACCCGGCTTCCGGTCCATTCAGGCTTGAGTGGGAACCAAGGACCAGAGAATTGGTCATCAACCATAGAGAACGAGCGTACTGGAAAAGTGGAGAATTGAGAAACAATAGATTTAAGCACATCTCTTCTTCTGCAGAATTCCACTATGAAACTGTGTCCAACAAGGATGAAGAGTACTTCACATTCAACACTGCAAATGAAGACAAATTTCCTATGTGGTCTCTATTAGCAACTGGGCAACTGATAAGCAGAAAAACTAGGGGGGATGATATAGCAAGGGCTGATTTGTGTTATGGGTACAACACTGATATTGAAGGGTGCCAAAAGTGGGAGGAGATACCAACCTGCAGGAGTCATGGTGATGTTTTTGAGACCAAGACAGGTTACCCCAATTATGACGTGGCAGACAATCTAATAAATGCTAATTACAGCATAAGTGATTGTCGGGCTATTTGTTGGAGCAACTGCAGCTGCGTTGGATTCAAATCCTATGATCATGATGATGGAACTAGTTGTACGTTTTTTGCATCAAAACAAGGTACTAATATTGCAGGCAGTGGCCAAACCTTCTACATGCTAGTAAAGAGCACCCATCACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	259683	260813	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010887.1	PF01453.19	B_lectin	67	146	6.50E-08
Glyur000196s00010887.1	PF08276.6	PAN_2	278	317	1.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.892
SRR1783600	control	3.810
SRR1783602	moderate drought stress	16.982
SRR1811619	moderate drought stress	15.954

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.894
DRR006520	Root Summer glycyrrhizin high producing strain	19.211
DRR006521	Root Winter glycyrrhizin high producing strain	1.936
DRR006522	Root Winter glycyrrhizin high producing strain	2.228
DRR006523	Root Summer glycyrrhizin low producing strain	65.735
DRR006524	Root Summer glycyrrhizin low producing strain	65.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.740
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.907

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.945
SRR2868004	Drought Stress (root)	6.238
SRR2967015	Control (root)	7.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.680
SRR9715740	Leaf	18.289
SRR9715741	Leaf	20.370
SRR9715739	Root	9.340
SRR9715742	Root	62.404
SRR9715743	Root	58.674

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.148
SRR8749028	MeJA induced 9h	0.825
SRR8749029	MeJA induced 9h	3.278
SRR8749030	Uninduced	0.367
SRR8749031	Uninduced	1.531
SRR8749032	Uninduced	2.331

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.561
SRR8400027	Control - Root	4.740