Gene detail

Gene detail information of Glyur000196s00010880.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66350.1	4.00E-66	RGA-like 1
NR	XP_003545708.1	0	PREDICTED: DELLA protein GAIP-like [Glycine max]
Swissprot	tr\|Q8S4W7\|GAI1_VITVI	3.00E-76	DELLA protein GAI1
trEMBL	tr\|K7MCT3\|K7MCT3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G28410.2}

Sequence

Transcript Sequence

>Glyur000196s00010880.1
ATGGAAGACTTAAACAGTTGGTTATCCTTCTATGTGAATGATTATGAAAGTATCAACCATGACTTTGCAATCAGAAGGTTTTGCCCTGCAAGAATGGAGGAGCAAGAGCAATTAGGAGGAGGAATAGAGTGCCAAGAGCAAGAGGTAGCAGTGGTTGATGAGATTATTGAGCTGTGTGCTTCTGATGATGCTGCAACCAACAGCACCACCACCCCTTGTTTGGCTTCTTCAGAGGTTGATGACTTTGTTGATAGCTTCATCAACATGGATCAGTATGTGTATGATCACAATGAATATCAACANGAGTCCCAAGAGAAAAAGAATAAGCACCATCAAGGTGGTTTTGATCACTTTGTGGTGGGGAATGAAGAAGAAGAAGATGCTATTGCTGATGCATACTCCATGGTGATGAATGATGATGTCATTGGAATTGGGTATGTCCCCACCAAAACCACAATGGGGGATGAAGAATTGGAGAATGTTTGTGGAAATGCCACAATCACCATGATGGAGGAGGAGGAATTAGAGGTTGTTGAAATGAGTGGTGGCTCTTTTGGTGCTGTGGATGAGTTTGTGCCTTGTGGTGATGCAGAAGAAGCTAGCCTTGGTATGGACCAAGGATTAGACTTGGTTCACATGCTGTTGGCATGTGCTGAGGCTGTAGGCTGCAGAGACACCCACCAAGCAGAGTTGCTTCTCACCAGAATTTGGGCTTTGGCAAGTCCTTCAGGAGATTCACTTCAGAGAGTCTCTTACTGTTTTTCCAAAGGGTTGAAGTGTAGGTTGTCATCACTTCTTCCCCATAACAACAACAACAATGTCTTTGCAAATAATGGCACACTCACACTCACAGGTGGTAATGCTATGATGGAAGATCATGTCCCTTTGGTCACTAGGGAGAAAAAGTTGGAAGCTTTTCAGCTCCTTTACCAAACCACACCTTACATTGCTTTTGGTTTCATGGCTGCAAATGAAGCNATCATCCAAGCATCAAAAGGAAAAGGATCCATACACATAATTGATCTAGGAATGGAACACACCTTTCAGTGGCCTTCCCTTATAAGGGCCCTTGCTTCTAGGCCTGATGGGNCTCCAAAGAAGCTCAGGATCACAGGATTCACAACAAATGAGGACAACCTTAAACTTCAAAACATCATGAATGTGCTTGTGGAGGAAGCAAGCTCACTTGGAATACCCCTTGAATTCCACATAATATCAGAGCCTCCAACACCATCAATTCTCACTATTGATAAGCTGAACTTGAAAAAAGGTGAGGCTTTATTTGTCAATAGCATCTTGCAGTTGCACAAATATGTCAAAGAAAGTAGAGGGTATCTGAAGGCAATTCTCCAATCAATAAAGCAGCTAGGTCCAATTGCAATCACAGTGGTAGAGCAAGACACAAACCACAATGGACCTTTCTTCCTTGGGCGGTTTCTGGAGTCACTTCACTATTACTCAGCAATATTTGACTCAATTGAGGCAAGCATGCCAAGGAATAGCCCACAGAGGATGAAGATAGAAAGGGTGCACTTTGCTGAGGAGATTCTCAACATTGTGGCTTGTGAGGGTCCTGATAGAATGGAGAGACATGAAAGGGTAGACCAATGGAGAAGGCAATTGGGAAGGGCAGGGTTCCAGGTAATGCCACTCAAGTGCACAAGTCAAGCTAGGATGATGCTTTCTGTTTATGACTGTGATGGGTACACATTGTCCAGTGAGAAGGGTTGCCTTCTACTTGGGTGGAAAGGAAGGCCAATCATGATGGCTTCTGCATGGCAAGTGGCAGCAAGTGTGTCATGTACTGATAGGCCCTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	219460	221280	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010880.1	PF03514.9	GRAS	210	594	2.10E-109

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.872
SRR1783600	control	0.867
SRR1783602	moderate drought stress	0.975
SRR1811619	moderate drought stress	1.006

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.654
DRR006520	Root Summer glycyrrhizin high producing strain	0.650
DRR006521	Root Winter glycyrrhizin high producing strain	1.382
DRR006522	Root Winter glycyrrhizin high producing strain	1.333
DRR006523	Root Summer glycyrrhizin low producing strain	0.303
DRR006524	Root Summer glycyrrhizin low producing strain	0.304
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.292

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.414
SRR2868004	Drought Stress (root)	0.061
SRR2967015	Control (root)	0.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.641
SRR9715740	Leaf	0.381
SRR9715741	Leaf	0.623
SRR9715739	Root	0.136
SRR9715742	Root	1.266
SRR9715743	Root	0.468

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.039
SRR8749028	MeJA induced 9h	0.068
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.644
SRR8400027	Control - Root	0.740