Gene detail information of Glyur000196s00010878 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48670.2 | 3.00E-166 | XH/XS domain-containing protein |
| NR | XP_004503147.1 | 0 | PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8VZ79|IDN2_ARATH | 0 | Protein INVOLVED IN DE NOVO 2 {ECO:0000303|PubMed:19915591} |
| trEMBL | tr|K7LRJ4|K7LRJ4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G34010.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00196 | 199092 | 204650 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000196s00010878.1 | PF03470.9 | zf-XS | 43 | 86 | 2.10E-16 |
| Glyur000196s00010878.1 | PF03468.9 | XS | 113 | 227 | 1.50E-40 |
| Glyur000196s00010878.1 | PF03469.9 | XH | 503 | 627 | 2.10E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.388 |
| SRR1783600 | control | 1.276 |
| SRR1783602 | moderate drought stress | 0.610 |
| SRR1811619 | moderate drought stress | 0.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.013 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.960 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.011 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.911 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.204 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.290 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.161 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.918 |
| SRR2868004 | Drought Stress (root) | 7.149 |
| SRR2967015 | Control (root) | 6.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.841 |
| SRR9715740 | Leaf | 1.226 |
| SRR9715741 | Leaf | 2.546 |
| SRR9715739 | Root | 0.024 |
| SRR9715742 | Root | 0.166 |
| SRR9715743 | Root | 0.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.065 |
| SRR8749028 | MeJA induced 9h | 0.154 |
| SRR8749029 | MeJA induced 9h | 0.028 |
| SRR8749030 | Uninduced | 0.338 |
| SRR8749031 | Uninduced | 0.424 |
| SRR8749032 | Uninduced | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.967 |
| SRR8400027 | Control - Root | 1.182 |