Gene detail

Gene detail information of Glyur000196s00010876.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12800.1	2.00E-126	short-chain dehydrogenase-reductase B
NR	XP_004517259.1	0	PREDICTED: peroxisomal 2,4-dienoyl-CoA reductase-like [Cicer arietinum]
COG	YP_003956089.1	2.00E-61	short chain dehydrogenase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9LTV6\|DECR2_ARATH	3.00E-162	Peroxisomal 2,4-dienoyl-CoA reductase
trEMBL	tr\|I3SGJ2\|I3SGJ2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39384.1}

Sequence

Transcript Sequence

>Glyur000196s00010876.1
AATTAATAATGATCAATCAATAAATCCGCCAAATTGGTGGTTTGCACTGGTGGAAGTTGAGGAGGAAGCAAAGCAAAACAAAAACCATCATCATCATCGATCGCAACGCAACGCAACGCAGCACAGCACAGCACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAAGCGATGGAGTCGCCGTTCAAGGGGGACATATTGAAGGGGAAGGTAGCTCTGATAACGGGTGGGGCATCGGGGATCGGGTTCGAAATATCGACCCAATTGGGGAAACACGGCGCATCNGTTGCACTCATGGGTCGCCGCACCCAAGTCCTCCACTCCGCTGTCTCCGTCCTCCAATCACTCTCCATCCCCGCGATTGGTTTTGAGGGTGATGTGCGGAAGCAAGAGGATGCGGCGAGAGTGGTGGAATCCACTTTCAAGCATTTCGGAAGGATCGACATCCTCGTCAATGCTGCTGCTGGCAACTTCCTTGTTTCCGCAGAGGATCTCTCCCCAAACGGATTCCGAACTGTTATGGATATTGATTCTGTTGGCACATTCACTATGTGCCATGAAGCGCTGAAATATCTCAAAAAAGGGGGACCAGGAAGGGGCTCTTCNGGTGGAGGAACAATAATAAACATTAGTGCTACCTTGCATTATACAGCTTCTTGGTATCAAATTCACGTATCAGCTGCAAAGGCAGCTGTTGATGCCACTACAAGAAACTTGGCACTAGAATGGGGAACAGACTATGATATTAGAGTCAATGGGATTGCACCAGGTCCAATAAGTGACACTCCTGGCATGAGTAAACTGGCTCCTGATGAAATAAATAGCAAAGCCAGAGATTACATGCCTCTCTATAAACTTGGGGAGAAATGGGATATTGCAATGGCTGCTCTCTACCTAGTATCAGACGCAGGAAAATTCATTAATGGCGACACTATCATAATTGATGGAGGACTTTGGCTGAGCCGGCCTCGTCATTTACCAAAAGAGGCAGTGAGGCAGGTATCACGAGCAGTAGAAAAGAGATCCAGAAATGAAGCAGTTGGTGTTCCAAAAAGCAAGCTATGACCCAGCAGATTCAGTATTAGCCCCTTCTACACAGCAGGGAATTACTTCTTTAAACAGTATGCTGGAGGATATGATCTCAATTATTTTTAAATTATTACCAGGCTCAACATTCTCTATCTATAAAATATAAACTATGATGATTTGAAGTCAATGTCATAGCTACATCCAACAGAAAATAAAAGGGTCATGGCTGGATCCCATGGTTGTTCCTTGTGCTTGGAACTGTAAGCAAATAATTCAGCAGTAACTATAAATGAGTGAATAAATGACNACACATTTTATTTAAACTAACAATAAAAAAGTGCAAAAATAGTGCAAGAGAGAGTGAGATCAAAGTCACTATCGCTCATTATAACAAATTAAGTTTTGANGTGTCTATTCCTGTTACAACCTTCTTGGCTTCAAACTGGGCGTACAAAATGCAACAGCAAGCGCTTAAAAATTTCATCCTCAACTATATATATTAATTTTTATACAACATCGAAAATTGAATACAAAAATTTCAACATAGTGACATACAAGACAAGCAAGGATGTACCCCCAGCTAATTCAATTTATCAAGACCAATGGCTGAAGATTTGTGAAAGNTGTCCAAGGCTAATTGATCAGCACAAATAATTCATAAACACTGGCCATTGAAGAGGAAAATGAGCTGGTTGAACAATTGCTCNACTACTATGTTCTCCCATGAATGTGTAGTAAGTGGTTGACTTTCTATGGAGAAGGTAGCACCAAAAAATGAGGTTGTAATACAAAAATCTACATGTGTCAACATCTATGGAGAGNTGCAGGGTATAAGTCCGGTAACTGATACCGTAGACGATCATTATGCGGCAACGGTCCCTCCTACACATTGACAAAATCATGAGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	192447	197355	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13237	DECR2	EC:1.3.1.34	Peroxisome	map04146

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010876.1	PF13561.1	adh_short_C2	22	261	3.70E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.654
SRR1783600	control	26.875
SRR1783602	moderate drought stress	16.015
SRR1811619	moderate drought stress	15.912

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.807
DRR006520	Root Summer glycyrrhizin high producing strain	30.433
DRR006521	Root Winter glycyrrhizin high producing strain	21.007
DRR006522	Root Winter glycyrrhizin high producing strain	20.443
DRR006523	Root Summer glycyrrhizin low producing strain	38.020
DRR006524	Root Summer glycyrrhizin low producing strain	39.027
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.126
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.456

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.807
SRR2868004	Drought Stress (root)	58.131
SRR2967015	Control (root)	49.587

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.657
SRR9715740	Leaf	47.450
SRR9715741	Leaf	53.714
SRR9715739	Root	8.664
SRR9715742	Root	18.156
SRR9715743	Root	19.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.635
SRR8749028	MeJA induced 9h	15.657
SRR8749029	MeJA induced 9h	13.841
SRR8749030	Uninduced	31.665
SRR8749031	Uninduced	17.528
SRR8749032	Uninduced	21.519

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.717
SRR8400027	Control - Root	37.254