Gene detail

Gene detail information of Glyur000196s00010875

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79560.1	0	FTSH protease 12
NR	XP_004516247.1	0	PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic-like isoform X2 [Cicer arietinum]
COG	NP_680922.1	1.00E-89	cell division protein [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|Q9SAJ3\|FTSHC_ARATH	0	ATP-dependent zinc metalloprotease FTSH 12, chloroplastic (Precursor)
trEMBL	tr\|K7L8H2\|K7L8H2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G25841.1}

Sequence

Transcript Sequence

>Glyur000196s00010875.1
AAAGAAATGGAACGGAACGTGGATAAAACCCCTTCGTCTTAAACCCCATTATCCCATAAGAAGCTCCATGTAGAAGCTGAAAATCCATCAATGGATCTTCTAATTGCACACAGGCCAAATCCACTCCTTCTCTCGTCATCACCACTAACCCCAACCTTTCAAAATCCGAAATTTCTCACGTTAACCGCACCGCCCAGTGGCCGCAGAAAGCTCAAGCTTCGAGCTTCAGCTACGGCAGACTCAAATGGCGCTGATGGGTCTTCATGGTCACGGTCTTTGGAACGCGCTTCGAGGCGGTTCTGGGTGAAATTTGGAGATACGGTGAAGAAGGAGACTGGTGTTGATTTGGGAGATGGTGTCGTGAAGGTGGGTGAGTTAGTGGATGGTGTGAAGAGCAGTGGAGGTGAGTTTGGAAGGATTGGAACTCGTTGGGTGTCCGAGTTTGTCGATTGGAACCGGTTGGAACATTGGAAGAATCTCAAGAATTGGGAACCTAGGCGAATTGGTGCATTAGTTCTTTATATGTTTGTCGTGGCATTTGCTTTTAGAGGAGTATATGTAGCAATTCAAGCACCTTACCTAAATCGACAGAGAAAAGAATTGACCGAAGCTTACATGGAAGCATTGGTTCCTGAGCCATCCCCAAGTAACATTNGAAGATTTAAGATGGGTATGTGGAGGAAGACAATGCCGAAAGGCCTGAAAATGAAAAAGCTTATTGAAAGACCTGATGGAACACTTGTTCATGATACTACATATGTTGGAGAGGATGCATGGGAGGATGATCAAGAAGCTCCTGAGGAACATGTAAAACAAATTATAGAGGATGATGAAAGTTTAAACAAAGAAGAGAAGAAAGAACTAACCAAAGACTTGAGCATTTCAGGTGAAGTTCAAACTGAGGGCACATGGCGTGAGAGACTTCGTAAATGGAGGGAAATCCTTGGAAAAGAGNGTCTCGTTGACCAATTGGATTCCTCAAATGCCAAATATGTAGTTGAATTTGACATGAAAGAGGTTGAAAATAGTCTTCGCAAGGATGTGGCAGAAAAGGTGACAGCCACTAGGGGAACAAGGGGTCTGTGGATAGCTAAGAGATGGTGGTGCTATCGTCCTAAACTTCCTTACAATTATTTTCTTGACAAACTTGATAGTTCCGAGGTANCAGCTGTTGTCTTTACTGAAGACTTGAAAAGATTGTACGTGACAATGAAAGAAGGTTTTCCATTGGAATTTATTGTTGATATCCCTCTTGATCCTTATCTTTTTGAGATTATTACTAGCTCTGGAGTTGAAGTGGATCTCCTTCAGAAGCAACAGATCCATTATTTCATGAAGGTTGTGATTGCATTAGTGCCTGGAATACTAATTCTCTGGCTTATAAGGGAGTCTGTGATGCTTCTACACATCACTTCCAAACGTTTTCTTTACAAGAAGTATAATCAACTCTTTGATATGGCTAATGCAGAAAATTTCATTATGCCAGTGGGAGAGGTTGGTGAAACACAGTCTATGTACAAGGAAGTGGTGTTGGGGGGTGATGTTTGGGATCTTCTTGATGAGTTGATGATCTATATGAGAAATCCTATGCAGTTTTATGAAAGGGATGTGCAGTTTGTTCGGGGTGTTCTTCTCTCTGGACCTCCAGGAACAGGAAAAACACTTTTTGCCAGGACACTTGCAAAAGAAAGTGGATTGCCTTTTGTTTTTGCTTCTGGTGCTGAGTTCACAGATAGTGAAAAAAGTGGAGCAGCTAGGGTTAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTGGATGAAATAGACGCCATTGCTGGAAGACATGCTAGGAAGGATCCACGTAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGACGGGGAGAAGGAAAAAACTGGTGTTGACCGTCTATCCCTCAAACAAGCTGTCATATTTATCTGTGCCACAAATAGGCCAGATGAATTAGATCGTGAATTTGTTCGACCTGGACGTATTGATCGTCGTCTGTACATTGGTTTGCCTGATGCAAAACAAAGAGTCCAAATTTTTGGTGTGCATAGTTCTGGAAGGCAATTTGCAGAGGATGTGGATTTTGAAAAGTATGCAAGACTTGATCTGCATTGTGCTGACTGTGGCTGCTCTTTCTCTGCCCCTGAACAGCTTGTCTTCCGTACTGTTGGATTTTCTGGAGCGGATATAAGAAACCTCGTCAACGAAGCAGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGCAAGACATTATTGATGTACTAGATAAACAACTGTTTGAGGGTATGGGTGTCCTTCTCACTGAGGAAGAACAACAGAAATCTGAAGAAAGGGTATCTTTTGAAAAGAANAGACTGCTTGCTGTACATGAAGCTGGTCATATTCTACTTGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTGCCTGGTGGTAAGGAAACTGCAATATCAGTATTCTACCCTCGAGAAGATATGATAGACCAAGGTTATACAACATTTGGTTACATGAAGATGCAAATGGTAGTGGCTCATGGTGGTAGATGTGCTGAACGTGTTGTATTTGGTGATGATGTAACTGATGGAGGAAGAGATGATCTCAAAAAGATAACAAAGATTGCTAGGGAGATGGTAATCAGCCCTCAAAATTCAAGGTTGGGGTTAATAGCTTTAACAAAAAGGGTCGGCTTTGTTGATCGACCAGACAGTTCAGGCCGCAAGTTGATAAGATATAGATGGGATGANCCTCAAGTAATTCCTGCTAATATGACGCCGGAGGTGTCCGAGCTCTTTACACGCGAGTTGACAAGGTACATTGAAGAAACCGAAGAACTTGCAATGAATGCTTTGCGGGATAATAGGCACATCCTGGACTTGGTTGCAAGAGAACTATTGGAGAAATCAAGAATAACTGGATTGGTAGGNTATACTCCGATTCTGCTGTCAGTTTCCTTTCTTTCATTGGAGAGCGAAGAGGTTGAAGAAAAAATGAAGGGACTGTCTCCAGTAATGTTTGAGGACTTTGTGGAGCCATTCCAAGTAAACTTAGAAGAGGAGGGACCGTTGCCGCATAATGATCGTCTACGGTATCAGTTACCGGACTTATACCCTGCANCTCTCCATAGATGTTGACACATGTAGATTTTTGTATTACAACCTCATTTTTTGGTGCTACCTTCTCCATAGAAAGTCAACCACTTACTACACATTCATGGGAGAACATAGTAGTNGAGCAATTGTTCAACCAGCTCATTTTCCTCTTCAATGGCCAGTGTTTATGAATTATTTGTGCTGATCAATTAGCCTTGGACANCTTTCACAAATCTTCAGCCATTGGTCTTGATAAATTGAATTAGCTGGGGGTACATCCTTGCTTGTCTTGTATGTCACTATGTTGAAATTTTTGTATTCAATTTTCGATGTTGTATAAAAATTAATATATATAGTTGAGGATGAAATTTTTAAGCGCTTGCTGTTGCATTTTGTACGCCCAGTTTGAAGCCAAGAAGGTTGTAACAGGAATAGACACNTCAAAACTTAATTTGTTATAATGAGCGATAGTGACTTTGATCTCACTCTCTCTTGCACTATTTTTGCACTTTTTTATTGTTAGTTTAAATAAAATGTGTNGTCATTTATTCACTCATTTATAGTTACTGCTGAATTATTTGCTTACAGTTCCAAGCACAAGGAACAACCATGGGATCCAGCCATGACCCTTTTATTTTCTGTTGGATGTAGCTATGACATTGACTTCAAATCATCATAGTTTATATTTTATAGATAGAGAATGTTGAGCCTGGTAATAATTTAAAAATAATTGAGATCATATCCTCCAGCATACTGTTTAAAGAAGTAATTCCCTGCTGTGTAGAAGGGGCTAATACTGAATCTGCTGGGTCATAGCTTGCTTTTTGGAACACCAACTGCTTCATTTCTGGATCTCTTTTCTACTGCTCGTGATACCTGCCTCACTGCCTCTTTTGGTAAATGACGAGGCCGGCTCAGCCAAAGTCCTCCATCAATTATGATAGTGTCGCCATTAATGAATTTTCCTTCACAGATTTGCACAAATGTTTTAAGTTTCCATGGACAAAATAATAAAAAATGATATCAATAAAATNGTTACTAATAGAGATACCTAGAGTAACAATATCTCCATTTCAATATCTTAACACTAAATCTTTTTTACCAGCACAACTGGATGGTCACACTATTCACCAAGTAAAAATGGAATAGAAGAAAA

Protein Sequence

>Glyur000196s00010875.1
MDLLIAHRPNPLLLSSSPLTPTFQNPKFLTLTAPPSGRRKLKLRASATADSNGADGSSWSRSLERASRRFWVKFGDTVKKETGVDLGDGVVKVGELVDGVKSSGGEFGRIGTRWVSEFVDWNRLEHWKNLKNWEPRRIGALVLYMFVVAFAFRGVYVAIQAPYLNRQRKELTEAYMEALVPEPSPSNIXRFKMGMWRKTMPKGLKMKKLIERPDGTLVHDTTYVGEDAWEDDQEAPEEHVKQIIEDDESLNKEEKKELTKDLSISGEVQTEGTWRERLRKWREILGKEXLVDQLDSSNAKYVVEFDMKEVENSLRKDVAEKVTATRGTRGLWIAKRWWCYRPKLPYNYFLDKLDSSEVXAVVFTEDLKRLYVTMKEGFPLEFIVDIPLDPYLFEIITSSGVEVDLLQKQQIHYFMKVVIALVPGILILWLIRESVMLLHITSKRFLYKKYNQLFDMANAENFIMPVGEVGETQSMYKEVVLGGDVWDLLDELMIYMRNPMQFYERDVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARVNEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRLSLKQAVIFICATNRPDELDREFVRPGRIDRRLYIGLPDAKQRVQIFGVHSSGRQFAEDVDFEKYARLDLHCADCGCSFSAPEQLVFRTVGFSGADIRNLVNEAAIMSVRKGHSKIFQQDIIDVLDKQLFEGMGVLLTEEEQQKSEERVSFEKXRLLAVHEAGHILLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMIDQGYTTFGYMKMQMVVAHGGRCAERVVFGDDVTDGGRDDLKKITKIAREMVISPQNSRLGLIALTKRVGFVDRPDSSGRKLIRYRWDXPQVIPANMTPEVSELFTRELTRYIEETEELAMNALRDNRHILDLVARELLEKSRITGLVGYTPILLSVSFLSLESEEVEEKMKGLSPVMFEDFVEPFQVNLEEEGPLPHNDRLRYQLPDLYPAXLHRC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	181798	193664	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010875.1	PF00004.24	AAA	513	649	2.60E-33
Glyur000196s00010875.1	PF01434.13	Peptidase_M41	757	958	4.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.635
SRR1783600	control	9.585
SRR1783602	moderate drought stress	5.416
SRR1811619	moderate drought stress	5.579

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.299
DRR006520	Root Summer glycyrrhizin high producing strain	9.170
DRR006521	Root Winter glycyrrhizin high producing strain	5.300
DRR006522	Root Winter glycyrrhizin high producing strain	5.352
DRR006523	Root Summer glycyrrhizin low producing strain	10.642
DRR006524	Root Summer glycyrrhizin low producing strain	10.416
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.670
SRR2868004	Drought Stress (root)	7.406
SRR2967015	Control (root)	6.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.854
SRR9715740	Leaf	27.512
SRR9715741	Leaf	13.601
SRR9715739	Root	1.161
SRR9715742	Root	7.330
SRR9715743	Root	6.740

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.512
SRR8749028	MeJA induced 9h	5.056
SRR8749029	MeJA induced 9h	4.272
SRR8749030	Uninduced	1.437
SRR8749031	Uninduced	1.022
SRR8749032	Uninduced	1.489

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.324
SRR8400027	Control - Root	15.501