Gene detail

Gene detail information of Glyur000196s00010873

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G16340.1	guanyl-nucleotide exchange factors;GTPase binding;GTP binding
NR	XP_004511179.1	PREDICTED: dedicator of cytokinesis protein 6-like [Cicer arietinum]
trEMBL	tr\|G7LB13\|G7LB13_MEDTR	Guanine nucleotide exchange factor, putative {ECO:0000313\|EMBL:AET02878.2}

Sequence

Transcript Sequence

>Glyur000196s00010873.1
CGTTTTTCTCTAGTTAGACTTCTTTTGACTTGTTTTCACTCTCTCTTTCTCTTTCTCTTCCCTTCTCTGCAGCACTTGCATTCAGCTACCTACTCCTTCCTTCTCTGCTTCTCTCTCTCTCTCACTCTCTCCATCTTCGCAATGCTTCTTCCTCCGCTTCCAGATCCAGCAAAAGCTCCACTTCGCTCACACTCTCCCTAGCGTTTGACACCAAAACGACGTCGTATTTGTATCCCTTCGCGGTCTTCGAGTTCACCAGCTCTCGCCGGAGAAAAACCCTAGATCCGCGATGCTCCATCTCCGGCACCGCCGGGATTCCACTCCGGCCACCACCAGGTGGCGCAACAAGTTCGACGAGAATCTGGAGCAGTGGCCGCACCTCAATGAGCTGGTTCATTGCTACACCACGGATTGGGTTAAGGATGAGAACAAGTACGGCCACTACGAAAGCGTTGGAACGCCGTCGTTTCACAACCAGATATATGAGGGACCTGACACTGACATTGAGACAGAAATGCGGCTTGCTGGTGCGAGGCGAACAAAGGGTGAAGATATTAGTGAAGATGACATCCCTAGTACTTCGGGAAGGCAGTTTATGGAAGCTGCAGACGGTGAACATTCGGATGTTCCAAAGCATTTTGGTCAATCTCCCCTTCCTGCTTATGAGCCGGCATTTGATTGGGAAAATGAAAGGTCATTGATATTTGGACAAAGGATACCAGAAACTCCTATATCACATGGAATGAAGATCTCTGTAAAAGTTCAGTCTTTACAATTTCAAGCAGGATTAATNGAACCCTTTTACGGTACGATTTGCTTATACAATAGGGAGAGAAGAGAGAAATTATCGGAAGACTTTTACTTTCACATCTTACCAACTGAAATGCAGGATGCCAAAATTACACATGAACCGCGTGCAATTTTTTACTTAGATGTGCCATCTGCTTCAGTTTGTTTGTTAATCCAGTTGGAGAAGCATGCTACTGAAGAAGGCGGGGTTACTCCTTCTGTTTATTCACGTAAAGATCCAGTGCATTTGACTGAGAGAGAGAAGCAAAAATTGCAGGTGTGGTCTCAAATCATGCCTTACAAAGAGTCCTTCGCATGGGCCATTGTATCATTATTTGATAGCAGCATTGGTGCAGCTTCGGTAGGGCCTGCTTCCCCTAGCAGCCCTCTTGCTCCAAGTGTATCTGGTTCAAGTTCACATGAAGGTGTTTTTGAGACTAGTACAAAAGTCTCTGTAGATGGAAAGCTGAGTTACTCAAATGGAAATTCTGTCATGGTTGAGGTTTCAAACTTAAATAAGGTCAAAGAAAGCTATACTGAGGAATCACTTCAGGATCCCAAGCGTAAAGTGCATAAACCTGTCAAAGGTGTTTTGAGACTGGAAATTGAAAAGCACCAGATTTCCCAAGCTGATTTGGAAAATATGTCAGAAAGTGGTAGTACAACCAATGATTCTGTTGACCCAGGGGATCGCATTGCAGATTCCATGACCGGAAAGTATCCAAGTAATGGTAGTGAAGATCCTCAGGGTAGCATGTCCAGGTGGAATTTCAGTGATGGGAAAGAAGTTTCAGGCAATGGAGCAAATCAACATGGAAATTCAGATTTTATTGCTGATGATTTNCATGCTTTTGACTTCCGCACAACAACAAGAAACGAGCCTTTTTTGCAACTTTTTCACTGCCTGTATGTGTATCCGTTGACTGTAAGTTTGGGTAGGAAAAGGAATTTGTTTATACGGGTTGAACTCAGGGAAGATGATGGTGACATTCGTAGACAGCCATTGGAGACAATATATCCTAGAGATCCGGGTCTAGAGACATCATTTCAGAAGTGGGGTCACACCCAAGTTGCTGTTGGGGCTAGGGTTGCTTGCTATCACGATGAAATTAAACTTTCCCTTCCGGCCATGTGGACACCAATGCACCATCTTCTATTTACTTTATTTCATGTTGATCTGCAAACAAAATTGGAAGCTCCAAAGCCAGTGGTAATTGGATTTGCAGCACTTCCTTTGTCGTCACATGCTCAGCTGCGGTCGGAAATAAATCTTCCGATTATGAGAGAGTTGGTTCCTCATTATCTACAGGATGGAGGACGGGAGAGGTTGGATTATTTGGAAGATGGGAAAAATATCTTCAGACTGCGTTTACGGTTATGTTCTTCTTTATATCCTATCAATGAACGTATTAGAGATTTCTTTCTTGAATATGATCGACACACTCTTCGAACAAGTCCACCTTGGGGTTCTGAACTTCTTGAGGCTATCAATAGTTTGAAGAATGTTGATTCTACTGCTTTACTTCAGTTTCTTCACCCAATTCTTAACATGCTACTTCACCTTATTGGCAATGGTGGAGAAACACTCCAGGTTGCAGCTTTCCGGGCCATGGTTAATATTGTAACCAGGGTGCAGCAGGAGTCAGTTGATGATGCTGAAAGAAATCATTTTCTAGTCAACTATGTTGATTGTGCTTTTGATGATTTTGGTGGTCGTCAACCACCAGTATATCCTGGATTATCCACTGTATGGGGAAGCCTGGCACGAAGTAAGGCTAAAGGGTATCGAGTTGGACCTGTGTATGATGATGTTTTGGCAATGGCATGGTTTTTTCTGGAGTTAATTGTTAAATCAATGGCATTGGAGAAGACTCGGCTCTTCTATCATAGTCTTCCAATAGGTGAAGATATCCCACCGATGCAGTTGAAGGATGGTGTATTCAGATGTATAATGCAATTGTATGATTGTCTTCTTACTGAGGTTCATGAGCGCTGCAAGAAGGGTTTAAGCTTGGCAAAGCGTTTGAACAGTAGTTTGGCCTTCTTTTGTTATGATCTTCTATCCATTATTGAGCCACGACAAGTTTTTGAGTTGGTATCATTGTACCTTGATAAATTCTCCGGCGTATGTCAATCAGTTCTTCACGAGTGCAAACTTACCTTTTTACAAATAGTATGCGACCATGATCTTTTCGTTGAAATGCCTGGGAGAGACCCTTCAGATAGGAACTATCTTTCATCTGTATTGATACAAGAACTCTTTGTTACTTGGGATCATGAAGATNTGTCTCTACGAGCAAAGGCAGCAAGAATCTTGGTAGTGCTCTTGTGCAAGCATGAGTTTGATGTGAGATACCAGAAGGTTGAAGATAAGTTGTATATTGCTCAGCTGTATTTTCCACTTATTGGACAGATATTAGATGAAATGCCTGTTTTCTACAACCTGAATTCTGTTGAAAAGCGTGAAGTTTCCATTGTAATTCTGCAAATAGTTCGAAACCTTGATGATGCATCACTTGTCAAGGCATGGCAGCAAAGCATTGCCCGGACAAGATTGTTTTTCAAGCTCATGGAGGAATGCTTACTTCTATTCGAGCACAAAAAACCTGCTGATGGCATGTTACTTGGCTCCAGTTCTCGCAACCCTGTAGGGGAGGCACCTGCTTCCCCCAAATACTCTGATAGACTTTCTCCTGCAATCAACAACTATCTATCTGAGGCCTCAAGGCAGGAAGTCAGGCCTCAGGGAACACCTGATAATGGATATTTATGGCAGAGAGTAAATTCCCAGTTAAGCTCCCCTAGCCAGCCATATTCCTTGAGAGAAGCTCTTGCTCAAGCACAGTCTTCTAGGATAGGAGCTTCTGCTCAAGCACTTCGAGAATCTTTGCATCCACTTTTGAGGCAGAAATTGGAACTTTGGGAGGAAAATTTGAGCGCATCTGTCAGTCTTCAGGTTTTGGAGGTGACTGAGAAATTCTCCATGATGGCAGCATCGCATAGCATTGCTACTGATTATGGAAAACTTGATTGCATCACAGCTGTGTTCGTGAGCTTTCTATCCAGAAATCAGCCACTGACTTTTTGGATAGCAGTTTTTCCCGTATTTAACGGTGTGTTTGATTTACATGGGGCAACTCTGATGGCAAGGGAAAATGATCGTTTTCTAAAGCAAGTCACCTTCCATCTCCTTCGGCTTGCAGTTTTCCGAAATGAAAACATCAGGAAAAGGGCAGTTGTTGGGCTTCAAATACTTGTCAGGTGTTCATTTCATTACTTTACGCAGACAGCAAGGTTAAGAGTCATGTTGATCATCACATTATCAGAGCTAATGTCTGATGTGCAAGTGACTCAAATGAGATCTGATGGTAGCCTAGAAGAGAGTGGTGAAGCACGGCGACTTAGAAAATCTTTAGAAGAAATGAAGGACGAAACTAAAAGTGCTTTCCTGTTGAAGGAGTGTGGATTATCTGAGAGTGCTCTTGTGACCGTAACAGAAAAAATGGTAGAGAATAGGTGGTCCTGGTCAGAGGTGAAATATCTCTCTGACAGTCTTCTTTTGGCCCTTGATGGTAGCTTGGAGCATGCACTATTGGCCCCCATGATGACTATGGATAGATATGCTGCTGCTGAAGGCTTCTATAAACTGGCAATGGCATTTGCGCCAGTCCCTGATCTTCACATAATGTGGTTACTTCATCTGTGTGATGCACATCAGGAAATGCAGTCATGGGCGGAAGCTGCTCAATGTGCTGTAGCTGTTGCTGGTGTTGTAATGCAGGCCCTTGTTGCCAGAAATGATGGTGTTTGGAGCAAAGACCATGTTGCTGCTTTACGTAAGATTTGTCCTATGGTTAGCAGTGAGATCACGTCTGAAGCATCTGCTGCAGAGGTAGAGGGATATGGTGCTTCAAAACTGACGGTTGACTCTGCTGTGAAATACCTGCAGCTTGCTAATAAGCTCTTCTCACAAGCTGAGCTTTTTCATTTCTGTGCAAGCATTCTGGAACTTGTAATCCCAGTTTACAAAAGCCGGAGGGCTTATGGACAGCTGGCTAAATGTCACACTTTACTTACCAATATCTATGAGTCAATACTTGAACAGGAATCTAGTCCAATTCCTTTCACTGATGCGACATACTACAGGGTTGGATTTTATGGTGATAGATTTGGGAAACTTGATAAAAAGGAGTATGTATATCGTGAGCCTCGTGATGTACGTCTAGGTGACATAATGGAAAAACTTAGTCACGTATACGAGTCCAGAATGGATGGTAATCACACTTTGCATATTATTCCAGATTCTAGACAAGTGAAGGCTGAGGAGTTACAGCCTGGTGTCTGCTACCTTCAGATTACTGCTGTAGATCCAGTCATGGAAGATGAGGATTTAGGAAGTAGAAGAGAAAGAATTTTCTCTCTTTCTACTGGAAGTGTCCGTGCTCGAGTATTTGACCGTTTTTTGTTTGATACCCCATTTACGAAAAATGGCAAGACTCAAGGTGGATTGGAAGATCAATGGAAGAGACGCACTGTTCTTCAGACCGAGGGTTCATTTCCAGCTTTAGTAAATAGGCTATTGGTAACCAAATCCGAATCCCTTGAATTTTCTCCCGTAGAAAATGCAATTGGAATGATTGAAACACGAACAGCTGCATTGAGAAATGAGCTTGAAGAGCCTCGAAGTTCTGAGGGGGATCAACTTCCACGACTCCAGAGTCTACAAAGAATCCTCCAAGGCAGTGTTGCAGTACAAGTGAATAGTGGAGTTTTGAGTGTTTGCACAGCCTTCTTGTCTGGGGAGCCTGCTACAAGGTTGCGATCACAGGAACTGCAGCAACTCATAGCTGCCCTTCTTGAGTTCATGGCTGTTTGCAAACGTGCNATCCGGGTGCATTTCAGATTGATTGGTGAGGAAGATCAGGATTTCCATACGCAACTTGTAAATGGATTTCAGTCTCTCACAGCAGAGTTGTCGCATTACATACCTGCCATTCTCTCTGAGCTATGACACTGGCAAGCACAAGTATTTGTTTTTTAATATTGCTTTGATGTGTTCATATCCCCTCCCTCTTTTTTTTTTCTTTCTCTTGCTTGCAAAGATGTGTAATTGCATTCGCATCNTGGTTCGCATATTTTTAGATAGAATTATGCGGACCAGCCGATTCCATGAAAACGTGAATCTTCTTGTTTGTGTATCATGCTNTCTCTATTTCCCCATTTACCCTTTTTTGTTTGTGATGCGGGGAATAATGTCATAATTCTGTGTAATATCTTAATTGTTTCAAGTGGTTTCGGCATACAGCTATTGTGTACAGTGTAGTGTACTCAAGAGAATCCTAGAGCACNGTCAATGAGGGAATGGTAATGACACAAGTAAACAAAAATGCATGAA

Protein Sequence

>Glyur000196s00010873.1
MLHLRHRRDSTPATTRWRNKFDENLEQWPHLNELVHCYTTDWVKDENKYGHYESVGTPSFHNQIYEGPDTDIETEMRLAGARRTKGEDISEDDIPSTSGRQFMEAADGEHSDVPKHFGQSPLPAYEPAFDWENERSLIFGQRIPETPISHGMKISVKVQSLQFQAGLXEPFYGTICLYNRERREKLSEDFYFHILPTEMQDAKITHEPRAIFYLDVPSASVCLLIQLEKHATEEGGVTPSVYSRKDPVHLTEREKQKLQVWSQIMPYKESFAWAIVSLFDSSIGAASVGPASPSSPLAPSVSGSSSHEGVFETSTKVSVDGKLSYSNGNSVMVEVSNLNKVKESYTEESLQDPKRKVHKPVKGVLRLEIEKHQISQADLENMSESGSTTNDSVDPGDRIADSMTGKYPSNGSEDPQGSMSRWNFSDGKEVSGNGANQHGNSDFIADDXHAFDFRTTTRNEPFLQLFHCLYVYPLTVSLGRKRNLFIRVELREDDGDIRRQPLETIYPRDPGLETSFQKWGHTQVAVGARVACYHDEIKLSLPAMWTPMHHLLFTLFHVDLQTKLEAPKPVVIGFAALPLSSHAQLRSEINLPIMRELVPHYLQDGGRERLDYLEDGKNIFRLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPILNMLLHLIGNGGETLQVAAFRAMVNIVTRVQQESVDDAERNHFLVNYVDCAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEKTRLFYHSLPIGEDIPPMQLKDGVFRCIMQLYDCLLTEVHERCKKGLSLAKRLNSSLAFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHECKLTFLQIVCDHDLFVEMPGRDPSDRNYLSSVLIQELFVTWDHEDXSLRAKAARILVVLLCKHEFDVRYQKVEDKLYIAQLYFPLIGQILDEMPVFYNLNSVEKREVSIVILQIVRNLDDASLVKAWQQSIARTRLFFKLMEECLLLFEHKKPADGMLLGSSSRNPVGEAPASPKYSDRLSPAINNYLSEASRQEVRPQGTPDNGYLWQRVNSQLSSPSQPYSLREALAQAQSSRIGASAQALRESLHPLLRQKLELWEENLSASVSLQVLEVTEKFSMMAASHSIATDYGKLDCITAVFVSFLSRNQPLTFWIAVFPVFNGVFDLHGATLMARENDRFLKQVTFHLLRLAVFRNENIRKRAVVGLQILVRCSFHYFTQTARLRVMLIITLSELMSDVQVTQMRSDGSLEESGEARRLRKSLEEMKDETKSAFLLKECGLSESALVTVTEKMVENRWSWSEVKYLSDSLLLALDGSLEHALLAPMMTMDRYAAAEGFYKLAMAFAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVVMQALVARNDGVWSKDHVAALRKICPMVSSEITSEASAAEVEGYGASKLTVDSAVKYLQLANKLFSQAELFHFCASILELVIPVYKSRRAYGQLAKCHTLLTNIYESILEQESSPIPFTDATYYRVGFYGDRFGKLDKKEYVYREPRDVRLGDIMEKLSHVYESRMDGNHTLHIIPDSRQVKAEELQPGVCYLQITAVDPVMEDEDLGSRRERIFSLSTGSVRARVFDRFLFDTPFTKNGKTQGGLEDQWKRRTVLQTEGSFPALVNRLLVTKSESLEFSPVENAIGMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIPAILSEL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	161816	180370	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007264 small GTPase mediated signal transduction

molecular_function

GO:0005085 guanyl-nucleotide exchange factor activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010873.1	PF14429.1	DOCK-C2	461	636	1.30E-34
Glyur000196s00010873.1	PF06920.8	Ded_cyto	1652	1826	1.20E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.534
SRR1783600	control	30.658
SRR1783602	moderate drought stress	25.934
SRR1811619	moderate drought stress	25.788

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.928
DRR006520	Root Summer glycyrrhizin high producing strain	21.669
DRR006521	Root Winter glycyrrhizin high producing strain	6.459
DRR006522	Root Winter glycyrrhizin high producing strain	6.286
DRR006523	Root Summer glycyrrhizin low producing strain	16.136
DRR006524	Root Summer glycyrrhizin low producing strain	16.254
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.552
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.493

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.117
SRR2868004	Drought Stress (root)	30.578
SRR2967015	Control (root)	33.499

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.080
SRR9715740	Leaf	10.860
SRR9715741	Leaf	14.372
SRR9715739	Root	9.795
SRR9715742	Root	37.618
SRR9715743	Root	33.962

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.364
SRR8749028	MeJA induced 9h	17.441
SRR8749029	MeJA induced 9h	9.694
SRR8749030	Uninduced	3.351
SRR8749031	Uninduced	1.697
SRR8749032	Uninduced	3.345

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.637
SRR8400027	Control - Root	41.649