Gene detail

Gene detail information of Glyur000196s00010871

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79520.2	3.00E-94	Cation efflux family protein
NR	KHN48873.1	1.70E-146	Metal tolerance protein 10 [Glycine soja]
COG	NP_579102.1	1.00E-16	cation transporter [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q9SAJ7\|MTP9_ARATH	3.00E-115	Metal tolerance protein 9
trEMBL	tr\|A0A072TRA6\|A0A072TRA6_MEDTR	6.00E-127	Cation diffusion facilitator family transporter {ECO:0000313\|EMBL:KEH19348.1}

Sequence

Transcript Sequence

>Glyur000196s00010871.1
CCGACCTACTAACGGGTTGTTCAATATTTAAACTCTCTGGTTTTTCCCCATCCCCTGCTATAAGTATAAAGTTTGAGAACGAAAGGGCGTTACTCATTCATTCTACACACACATATATATCTCAGTNACACAAATTATAAAATAAAACTGTAAATTAAGCAGAAAGAGCGATGTCGGAGAGTGGCAGAGGACACGGAGGCGCCACCGCCGAAACCGTCGGTGGAGAACCGTTCCCAGTGTCGAATTCCGCCGGAGACACGCCTTCGTCATTGTCGTGGAGACTGAACGTGAANGAGTTTCAGTTGCCACGTCACACTCATCAACACCACCAACAACACCATGATCATGATCATCACCGCACACGTGATTCCTTCACTTTCCGTGGCCTTCTTCGCAAACCCAAGAAGCAACGCAAGGATGAAGTGAAGCAACTAGCAAAAAGTGAGAGACTAGCAGTTAATGTGTCAAATGCAGTTAACTTGGTGCTCTTTGCAGCAAAGTCTAAGCCTGAAATGGATTCTGGTGAGATGAATTGGATGATTGGGATTATGGCATCCGTGACAGTGGTGAAGTTCATTCTTATGGTCTACTGTCGAAGGTTTAAAAACGANATCGTCAGAGCCTATGCACAAGATCATTTGTTTGATGTTATCACTAATTCAGTTGGATTGGCTGCTGCTGTTCTAGCTGTCAAGTTCTATTGGTGGATTGATCCAATGGGAGCTATCATTATAGCATTGTACACAATTAACACATGGGTGAAGACAGTCATTGAGAATGTGTCATCTCTGATTGGGAAGACAGCACCACCTGATTTTCTAGCAAAGTTGACATATCTGATATGGAATCACCATGAAGAGGTTAAGCACATAGATACTGTGAGAGCATACACCTTTGGTGCTCATTACTTTGTTGAGGTNGACATTGTGTTGCCAGAGGACATGCTTCTCAATCAAGCACACAATATTGGTGAGACACTGCAAGAGAAGCTGGAGCAACTTCCTGAGGTTGAAAGAGCTTTTGTGCACATTGATTTTGAATTTACTCACAGGCCTGAACACAAGATGATGGTATAAAGNGGTGAAATGGTTTAAAATGGGGATGTGACACTCAGTTAACATCAGCTGGTTGAGTCTCTTTCCTTTTGTATTTTAGACAAATAAGACAAGGTTTTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	129816	135003	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010871.1	PF01545.16	Cation_efflux	117	291	4.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.424
SRR1783600	control	0.459
SRR1783602	moderate drought stress	0.360
SRR1811619	moderate drought stress	0.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.925
DRR006520	Root Summer glycyrrhizin high producing strain	2.141
DRR006521	Root Winter glycyrrhizin high producing strain	20.326
DRR006522	Root Winter glycyrrhizin high producing strain	20.424
DRR006523	Root Summer glycyrrhizin low producing strain	2.041
DRR006524	Root Summer glycyrrhizin low producing strain	1.968
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.411
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.366
SRR2868004	Drought Stress (root)	21.946
SRR2967015	Control (root)	19.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.339
SRR9715740	Leaf	0.161
SRR9715741	Leaf	0.502
SRR9715739	Root	0.000
SRR9715742	Root	0.107
SRR9715743	Root	0.269

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.346
SRR8749028	MeJA induced 9h	0.257
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.659
SRR8749031	Uninduced	0.716
SRR8749032	Uninduced	0.464

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.631
SRR8400027	Control - Root	2.395