Gene detail information of Glyur000196s00010868 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16330.1 | 1.00E-133 | cyclin b3;1 |
| NR | XP_003530394.2 | 0 | PREDICTED: putative cyclin-B3-1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SA32|CCB31_ARATH | 3.00E-151 | Putative cyclin-B3-1 |
| trEMBL | tr|K7L8E0|K7L8E0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G25461.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00196 | 116923 | 123714 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000196s00010868.1 | PF00134.18 | Cyclin_N | 339 | 465 | 4.40E-40 |
| Glyur000196s00010868.1 | PF02984.14 | Cyclin_C | 467 | 584 | 2.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.641 |
| SRR1783600 | control | 2.767 |
| SRR1783602 | moderate drought stress | 1.315 |
| SRR1811619 | moderate drought stress | 1.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.981 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.661 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.138 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.582 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.868 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.913 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.340 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.901 |
| SRR2868004 | Drought Stress (root) | 3.553 |
| SRR2967015 | Control (root) | 4.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.475 |
| SRR9715740 | Leaf | 0.115 |
| SRR9715741 | Leaf | 0.644 |
| SRR9715739 | Root | 0.125 |
| SRR9715742 | Root | 0.176 |
| SRR9715743 | Root | 0.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.788 |
| SRR8749028 | MeJA induced 9h | 8.441 |
| SRR8749029 | MeJA induced 9h | 9.339 |
| SRR8749030 | Uninduced | 2.810 |
| SRR8749031 | Uninduced | 1.792 |
| SRR8749032 | Uninduced | 1.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.017 |
| SRR8400027 | Control - Root | 4.110 |