Gene detail information of Glyur000196s00010866 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54320.1 | 3.00E-147 | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein |
| NR | AFK48771.1 | 0 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9SLK2|ALIS3_ARATH | 0 | ALA-interacting subunit 3 |
| trEMBL | tr|I3T8C9|I3T8C9_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK48771.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00196 | 105244 | 109777 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000196s00010866.1 | PF03381.10 | CDC50 | 62 | 329 | 1.30E-93 |
| Glyur000196s00010866.2 | PF03381.10 | CDC50 | 62 | 329 | 1.30E-93 |
| Glyur000196s00010866.3 | PF03381.10 | CDC50 | 62 | 329 | 1.30E-93 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 102.336 |
| SRR1783600 | control | 102.926 |
| SRR1783602 | moderate drought stress | 149.512 |
| SRR1811619 | moderate drought stress | 148.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 102.396 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 99.154 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 95.460 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 93.918 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 184.566 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 187.598 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 203.443 |
| SRR2868004 | Drought Stress (root) | 364.756 |
| SRR2967015 | Control (root) | 262.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 264.559 |
| SRR9715740 | Leaf | 245.684 |
| SRR9715741 | Leaf | 363.110 |
| SRR9715739 | Root | 104.231 |
| SRR9715742 | Root | 149.139 |
| SRR9715743 | Root | 142.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 188.654 |
| SRR8749028 | MeJA induced 9h | 308.408 |
| SRR8749029 | MeJA induced 9h | 327.043 |
| SRR8749030 | Uninduced | 789.321 |
| SRR8749031 | Uninduced | 742.031 |
| SRR8749032 | Uninduced | 632.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 142.374 |
| SRR8400027 | Control - Root | 143.868 |