Gene detail

Gene detail information of Glyur000196s00010861

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48150.1	0	anaphase-promoting complex subunit 8
NR	XP_004486012.1	0	PREDICTED: anaphase-promoting complex subunit 8-like [Cicer arietinum]
COG	YP_005471487.1	4.00E-13	hypothetical protein [Fervidobacterium pennivorans DSM 9078]
Swissprot	tr\|Q9STS3\|CDC23_ARATH	0	Anaphase-promoting complex subunit 8
trEMBL	tr\|I1LGI1\|I1LGI1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G02890.1}

Sequence

Transcript Sequence

>Glyur000196s00010861.1
GCAGTGTGAGGGACGGCGGAGTGAGTGAGTGATGAGTTCGAAAGAAAGTTGCAGAAGCGAACTTCGCATTGCGATTCGTCAACTCAGCGATCGATGCCTCTACTCCGCTTCCAAATGGGCAGCGGAACAGTTAGTGGGGATCGAGCAGGACCAGCGAAGTTCACTCCTTCGAACACCAGGTTCCAGCGTGGCAGCTCCAGCATTCGCCGCAAGTACCGCACGCACGAGATCGCGAACACTCCCACCGCCGGCGTGTCTTACGTGGCCACGCCGGTGATGGAGGAGGACGACCTCGTCGACGGCGACTTCTACCTCCTCGCTAAGTCCTACTTCGATTGCCGCGAGTACAAGAGAGCCGCACACGCCGGAGAAAAGCGAAAAGAGGAAGAGATGATAGAACTTGAGGGACCTCTGGGTAAGAGTGATGCTGTGAATCATGAATTGGTTTCTTTAGAGAGGGAGTTGTCAACACTTCGCAAGAATGGCACAGTTGATCCGTTTGGTTTGTATTTATATGGTCTTATACTGAAACAGAAAGGCAATGAGAATCTGGCACGTACAGTTCTTGTGGAATCTGTTAATAGCTACCCTTGGAACTGGAATGCCTGGACTGAGCTGCAATCCTTATGCACTACAGTTGATATCTTGAATAGTCTTAATCTCTGTAGCCATTGGATGAAGGACTTTTTCCTTGCCAGTGCTTACCANGAATTAAGGATGCATAATGAGTCTCTGTCAAAATATGAATATCTACTCGGAACTTTTTGTTATAGTAATTACATACAGGCTCAAATTGCTAAAGCCCAGTACAGTTTGAGGGAATTTGATCGAGTTGAAGCAATATTTGAAGAGCTGCTGAGGAATGATCCTTATAGAGTGGAAGACATGGACATGTACTCCAATGTGCTTTATGCTAAGGAATGTTTTTCTGCTTTGAGTTACCTTGCCCATAGAGTATTCATGACTGATAAATACAGACCCGAATCTTGTTGTATCATTGGTAATTATTACAGTTTAAAAGGGCAACATGAAAAGTCAGTTACATATTTTAGGAGAGCCCTTAAACTGAACAAAAATTATCTATCCGCATGGACACTTATGGGTCATGAGTTTGTCGAGATGAAAAACACTCCTGCTGCTGTTGATGCCTATCGTCGAGCTGTAGATATAGACCCTTGCGATTATCGAGCTTGGTATGGACTGGGACAAGCTTATGAGATGATGGGTATGCCTTTCTATGCACTTCATTACTTCAAAAAATCTGTTTTCTTGCAGCCAAATGATTCTCGGTTGTGGATTGCAATGGCTCAATGCTATGAAACGGACCAGCTTCGCATGCTTGATGAGGCAATAAAGTGTTACAGAAGGGCAGCAAATTGTAATGATAGGGAAGCAATTGCTCTGCACCAACTAGCAAAGCTGCACTCGGAGCTCGGACGCCCTGAAGAGGCAGCATTTTACTACAAAAAGGATTTAGAGAGGATGGAATCTGAAGAGAGAGAAGGACCCAACATGGTTGAGGCTTTGCTCTATCTTGCAAAATATTACAANGCGCAGAAAAGATTTGAAGAAGCAGAGGTTTATTGTACACGTCTTCTGGATTATACTGGCCCGGAAAGAAAACTAAGGATAAGTACTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	70394	74955	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition

cellular_component
GO:0005680 anaphase-promoting complex

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010861.1	PF04049.8	APC8	53	90	2.00E-08
Glyur000196s00010861.1	PF00515.23	TPR_1	297	329	1.30E-05
Glyur000196s00010861.1	PF13414.1	TPR_11	332	378	2.00E-08
Glyur000196s00010861.1	PF13424.1	TPR_12	433	503	1.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.561
SRR1783600	control	6.893
SRR1783602	moderate drought stress	6.660
SRR1811619	moderate drought stress	6.385

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.684
DRR006520	Root Summer glycyrrhizin high producing strain	7.502
DRR006521	Root Winter glycyrrhizin high producing strain	4.948
DRR006522	Root Winter glycyrrhizin high producing strain	5.095
DRR006523	Root Summer glycyrrhizin low producing strain	5.494
DRR006524	Root Summer glycyrrhizin low producing strain	5.165
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.324
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.972

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.534
SRR2868004	Drought Stress (root)	7.602
SRR2967015	Control (root)	8.661

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.732
SRR9715740	Leaf	3.041
SRR9715741	Leaf	3.905
SRR9715739	Root	2.613
SRR9715742	Root	6.724
SRR9715743	Root	5.171

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.542
SRR8749028	MeJA induced 9h	5.337
SRR8749029	MeJA induced 9h	3.012
SRR8749030	Uninduced	0.565
SRR8749031	Uninduced	0.270
SRR8749032	Uninduced	0.453

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.347
SRR8400027	Control - Root	12.388