Gene detail

Gene detail information of Glyur000196s00010856

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79350.1	0	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_004509999.1	0	PREDICTED: protein strawberry notch-like isoform X1 [Cicer arietinum]
COG	YP_676360.1	1.00E-82	methylase/helicase [Chelativorans sp. BNC1]
trEMBL	tr\|Q7F1V5\|Q7F1V5_ORYSJ	0	Putative sno protein {ECO:0000313\|EMBL:BAD02983.1}

Sequence

Transcript Sequence

>Glyur000196s00010856.1
AAACAATCCATTCATTCTTTTGGGCTCATTTCCTTCAGAATCACAAAACAACGCAGAGACAGACACAGAGCGAGACATAAGGCAGACAGAACAGAAGAAGGAAGAGAAAGTAATAATAAACCTTCCCTTCCCTGCCCGCCCTGCCCGCCAAACACGAAACCCTTTCGCGCTCTCCTCCCACTCGCCCGAAAGAGAGAACAAAGAAAAATGACACAGCCACCGGTGCCCTCTCCCCCTCCGCCGCTAACTCCGCCACCTCCGCCGACAGCTCCGTCGCCAAATCCCTCCGAGAGCGTCCGCGTCCGCTGTGCCGGATGCCGTATGATCCTGACCGTTGCGCCNGGGCTGACCGAGTTCGCCTGCCCTACCTGCCGAATGCCGCAGATGCTTCCACCCGAACTCATGGCCAGGGCTCACCAAACACCACCGCCTCCGCCGCAGCATCCGTCGCTGCCTCCTCCTCCTTCCGCCGCCGCTGCAACAACGGCTTCGCAGCAGCAAGTGGCCGCACACGGCATTGATCCAACTAAGATCCAGCTTCCCTGCGCTTCCTGCAAGGCAATCCTCAACGTCCCTCACGGCCTCGCGAGATTCTCTTGTCCCCAATGTAACGTTGACCTCGCCGTCGATCTCTCCAAGGTCAAGCAGTTCTTCCCCACCCCGCCTCCTCTCGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGCGGGATGAAGATGAAGGTGGCATGGCTGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGGCTGCAGTGCAGCCACCTGAGCCTACATATGATCCAAAAACTAAAGATAATTTGGAAAGTTCAANGGCTTTGTCATGCTTGCAAATTGAGACACTGGTCTATGCTTGTCAGAGACACCTTCAACACCTCCCCGGTGGAGCTAGGGCAGGGTTCTTTATTGGAGATGGAGCCGGTGTAGGTAAAGGTCGAACAATTGCAGGTCTAATTTGGGANAACTGGCACCATGGAAGGAGAAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTGGGTGCAACATGTATTGAAGTGCATGCTTTGAACAAACTACCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTCATGACGTACAATAGCCTAATAGCATCTTCTGAGAAAGGTCGTACTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGATGGTCTTGTAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGTAGTCAGCCAACACGTACTGGAGAAGCGGTACTTGAAATCCAGGATCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCAACTGGTGCATCTGAACCTCGCAATATGGGNTATATGGTTCGACTGGGTCTTTGGGGAGATGGGACTTCTTTCTCTGATTTCCGTGAATTTCTAGGTGCTCTTGATAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACACTTAGCTACGAGGGTGCTGAGTTTGAAGTTATTGAAGCACCATTAGAAGATAAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTGTCAGCCAGTGCCTTCCTAAATGATAAACCTAATACTAGTCAACTATGGCGGTTATATTGGGCTAGCCATCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTACCGTGAGACTAGCGAAACAAGCATTAATTGAAGAAAAGTGTGTAGTAATTGGTCTTCAGAGTACTGGAGAAGCAAGNACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAACTACCCATTACCAGAAAAACCCGAACTTCTTCCAGGAGAGGATGGGGTTAAGGAGCTCCAACGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAATAAAAGGAAGGGTNAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCAGAAAGTGATGAAGAATCTGAATGGGGCCCTGACAATGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGAGCCTCTACTGGAAAAGGTGTAACTTATCAGGCTCGTAATACAAAGGATGTCACTATGGAAATGGTTAACATGCACGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTAGTTGCCATTATCTCCGAAGCTGGATCAGCTGGCGTTTCTTTGCAGGCAGATAGGAGAGCCGGAAATCAGAGCTTCCATGGAGTGCTGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGCTGACTCTGGTATTGAAGCTACTGACTCCGATGACGAGTTCCAGATATGTGAAATTTGCACTACTGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCCTGCTGTGGTAAATTAGTCCATTCGACATGCTTGATGCCACCAATTGGGGATATAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCAAGCAAGACAGGCCTACNTAACTGAACTCCAGAAGAGGTATGATGCAGCCTTGGAACGTAAGACAAAAATATCAGAGATTATTCGTTCTTTGNATCTTCCAAATAATCCGTTGGATGATATTATTGACCAGCTAGGGGGCCCTGACAATGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGAGCCTCTACTGGAAAAGGTGTAACTTATCAGGCTCGTAATACAAAGGANGTCACTATGGAAATGGTTAACATGCACGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTAGTTGCCATTATCTCCGAAGCTGGATCAGCTGGCGTTTCTTTGCAGGCAGATAGGAGAGCCGGAAATCAGAAACGAAGGGTTCATTTAACTCTAGAGCTTCCATGGAGTGCTGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGGCAGGACCTTCATTAAGCGCTTATAATTACGATAGTGCTTACGGAAAGAGGGCTCTGATGNTTATGTACAAAGGAATAATGGAGCAGGATTCTCTACCTGTTGTACCTCCAGGATGTTCATCTGACAGACCAGATACAATTCAAGATTTTATTATGCAGGCAAAAGCCGCTCTTGTATCTGTTGGGATAGTTAGGGACACAACTCTTGGTAATGGTAAAGATCTTGGAAGGTTATCTGGTCGCATTATTGATTCAGATATGCATGAAGTTGGACGATTCCTCAACCGGCTTTTGGGACTACCTCCTGATATTCAGAATGGTATCTTGGATCTTCTCATTCGGAATGCTCGCATCGAAGGTAACCTTGACACCGGCATNGTTGACTTGAAAGCTAATCTCATTGAACTACAGGGGACTCCAAAGACAGTTCATGTTGATCAAATGACAGGGGCTTCAACAGTTCTGTTTACATTCATCTTGGATCGTGGGATCACATGGGAGGTNGTTTTGGCAAGTAACATGCTAAATGAAAAGCAGAAGGATGGGCTTGGTTCAACCAATGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTATGTATAAGATAGTTCGTCCCCCCGTTGGAGAATCAAACCGGGAGATGCATCTATCTGAATTAAANAGTAAATATAGAAAAATTTCATCTTTAGAGAAGGCTCAAACTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAAATGTAAGATTGGCAACTTCTGTACAGTGGGNAGAAGACAACAGGAAGTGAATGTCTTGGGTGGCCTCATTCTTCCTGTTTGGGGAACCATAGAAAAAGCCCTTTCTAAGCAGGCCCGCCTAAGCCATAGAAGGCTACGTGTCGTACGCATTGAGACTAGTGTGGATAACCAACGTATCGTTGGGCTTCTTGTTCCAAATGCAGCTGTTGAAACTGTGCTTCAAGATTTAGCATGGGTTCAAGAACTTGATGATTGACTTGTGACACAAGGCTTTGCTCACCTTTTCGTTTTAACAAAGTTTGAACTCAGCGTGCTGCCTTCTGAAAGTTGCTTGCACGTCTGCCAATCTCCAGTGTCCTTTGTATGACCCAACAAGCAATTTTTGTTATAGGAAANGGCTCAGCCTTGATGCTGGATTTTTTATGGAGAGGGGAATGACTCAATCCGCTGCGCCATTCAACACAATTGTGCAGAGTCTCATTTAGTTATTAATTTGTAACCCATTTTGGAATATGATTCGATTTTTGTATATTTTTGTAAAGATGCTTCACTGAGACGGTAGATGGCTAGGTTGTATCACATATAGTCCAGTCTGAATTTGAACCAGTTTGTATCAGATATCACCAATGATTATTAAAAATTATAGTTGAGGTAAATATATTCCTTTTGAGCAACATCGGTTGTCCACAAACAGACTGTAATACACGAGCATACCATGCACAACACACCGATCACAATTGTTCTTAAACTGCATCTCCATCGCCAACCAAGTTTGTTTTGAAAACAAAAGNAAAAAAGTACAACGTAAATTTTGCAGCTGCAGGATGGGAAAACACATTATTCTCTCTGCCTGCATCAGATAACACTTCAGCACACGAAAGGAGCATCAACATGATGGTCACTGCAATAGAGCCCTGGTCGTTGAGTGAAACCTGATTTCTTGAGCCTCTGTCTAGCCTTCATAACAAGCTCAGAATTTGTAACTGCACCATCAGTCTCCTCAATTATAGCCTGTATTGCGTTGCTGAAAGCTCCATAAGCACCGTCTGCATTTCCNGCAGGACTTGCATCTGCCGAAGTCTGGTCTGTCTGACAGCCACTCATCAGAATTCCACCATCCGGAAGNCCGCGCTTTGTCGATCCGGCATATGCCTCATGCTTGCTTCCCATGGGTGTCTCCATGGCAGGTTTTGCATACCCCTCGTCATTCCCATCCAGCTTTTGCTTGAGAAACTCTTGGGCAAGACTACCCACCATCCCCAATATCCCACCCTGTCCACCTTCACCACCTCCTTGTTGGAGTTTGTCCAAGATAACCTTCATAAACTTCTTCACCTTAGGGCTAGCATCTTCCCCAAAAACATCAAAAAGGGTAGGTCTCAATTTGCCAACATCTATATCCTCTTTCCCAGTTTTCTGCTTGAGTATGTCAATGAGGGTTGAAAGAGGCAGAGACCTATTCTTTACATAGCCATAGTCTCCATGTGGAAGTTCAATATCCCTATCTTGAGCTTCATCATCATCATCCCTGCGTCCGTGATGGCGCAATGCAGAAGGGACATGGAATCCCCGAGACTCAANAGCATCTTCCACTTTCCGATGGAGGAAGCTTGACAATCCAAAGCCTGAGCCCCCAGATTGTTGTTCCCCTTCTCCCTTTGTGCTCTCTCCTATCTGCTCCTTAACTTCTTCAATCAGGCCACCACTGTGACAAGAATCTGATACAATAGTGAGCCTACACCCTCTAGGAATCCCATCNACAAATTCCTTGAAATCATCATCTGTATTCACATAGACACACACACATAGCTCATTACTACTTCCCACAAGAATCATGTCAAT

Protein Sequence

>Glyur000196s00010856.1
MTQPPVPSPPPPLTPPPPPTAPSPNPSESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMARAHQTPPPPPQHPSLPPPPSAAAATTASQQQVAAHGIDPTKIQLPCASCKAILNVPHGLARFSCPQCNVDLAVDLSKVKQFFPTPPPLEEVNEVAVEVERDEDEGGMAGETFTDYRPPKVSIGPPHPDPVVETSSLAAVQPPEPTYDPKTKDNLESSXALSCLQIETLVYACQRHLQHLPGGARAGFFIGDGAGVGKGRTIAGLIWXNWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFMTYNSLIASSEKGRTRLQQLVQWCGPGFDGLVIFDECHKAKNLVPESGSQPTRTGEAVLEIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEDKMMDMYKKAAEFWAELRVELLSASAFLNDKPNTSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALIEEKCVVIGLQSTGEAXTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSIKGRVRKVAKWQPPSDAESDEESEWGPDNVAEMTGRRGMLVRASTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAGNQSFHGVLTEQFSSLEELIDQIKLQHQNTADSGIEATDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDIVPEEWSCHLCKEKTDEYLQARQAYXTELQKRYDAALERKTKISEIIRSLXLPNNPLDDIIDQLGGPDNVAEMTGRRGMLVRASTGKGVTYQARNTKXVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAGNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRAGPSLSAYNYDSAYGKRALMXMYKGIMEQDSLPVVPPGCSSDRPDTIQDFIMQAKAALVSVGIVRDTTLGNGKDLGRLSGRIIDSDMHEVGRFLNRLLGLPPDIQNGILDLLIRNARIEGNLDTGXVDLKANLIELQGTPKTVHVDQMTGASTVLFTFILDRGITWEVVLASNMLNEKQKDGLGSTNDGFYESKREWLGKRHFILAFESSASGMYKIVRPPVGESNREMHLSELXSKYRKISSLEKAQTGWEEEYEVSSKQCMHGPKCKIGNFCTVGRRQQEVNVLGGLILPVWGTIEKALSKQARLSHRRLRVVRIETSVDNQRIVGLLVPNAAVETVLQDLAWVQELDD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00196	10450	30693	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000196s00010856.1	PF13872.1	AAA_34	192	493	1.10E-124
Glyur000196s00010856.1	PF13871.1	Helicase_C_4	657	733	1.10E-27
Glyur000196s00010856.1	PF13871.1	Helicase_C_4	864	986	8.50E-59
Glyur000196s00010856.1	PF13871.1	Helicase_C_4	990	1100	7.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.753
SRR1783600	control	18.823
SRR1783602	moderate drought stress	16.532
SRR1811619	moderate drought stress	16.250

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.857
DRR006520	Root Summer glycyrrhizin high producing strain	21.536
DRR006521	Root Winter glycyrrhizin high producing strain	15.253
DRR006522	Root Winter glycyrrhizin high producing strain	14.364
DRR006523	Root Summer glycyrrhizin low producing strain	28.092
DRR006524	Root Summer glycyrrhizin low producing strain	27.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.663
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.543

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.007
SRR2868004	Drought Stress (root)	49.923
SRR2967015	Control (root)	58.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.108
SRR9715740	Leaf	16.028
SRR9715741	Leaf	18.561
SRR9715739	Root	15.454
SRR9715742	Root	24.246
SRR9715743	Root	21.848

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.419
SRR8749028	MeJA induced 9h	29.933
SRR8749029	MeJA induced 9h	22.304
SRR8749030	Uninduced	21.190
SRR8749031	Uninduced	21.502
SRR8749032	Uninduced	15.996

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.958
SRR8400027	Control - Root	48.674