Gene detail information of Glyur000196s00010855 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79340.1 | 2.00E-134 | metacaspase 4 |
| NR | XP_004510001.1 | 0 | PREDICTED: metacaspase-4-like [Cicer arietinum] |
| COG | YP_003206954.1 | 4.00E-27 | Caspase-1, p20 [Candidatus Methylomirabilis oxyfera] |
| Swissprot | tr|O64518|MCA5_ARATH | 0 | Metacaspase-5 |
| trEMBL | tr|A0A072U0M2|A0A072U0M2_MEDTR | 0 | ICE-like protease (Caspase) p20 domain protein {ECO:0000313|EMBL:KEH19330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00196 | 9465 | 12063 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000196s00010855.1 | PF00656.17 | Peptidase_C14 | 3 | 417 | 2.40E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 44.175 |
| SRR1783600 | control | 44.670 |
| SRR1783602 | moderate drought stress | 33.491 |
| SRR1811619 | moderate drought stress | 33.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.075 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.215 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.967 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 96.689 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.871 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.067 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 102.663 |
| SRR2868004 | Drought Stress (root) | 121.645 |
| SRR2967015 | Control (root) | 126.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.018 |
| SRR9715740 | Leaf | 17.492 |
| SRR9715741 | Leaf | 23.321 |
| SRR9715739 | Root | 61.450 |
| SRR9715742 | Root | 62.438 |
| SRR9715743 | Root | 45.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.819 |
| SRR8749028 | MeJA induced 9h | 57.402 |
| SRR8749029 | MeJA induced 9h | 47.966 |
| SRR8749030 | Uninduced | 72.505 |
| SRR8749031 | Uninduced | 43.848 |
| SRR8749032 | Uninduced | 25.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 101.062 |
| SRR8400027 | Control - Root | 110.833 |