Gene detail information of Glyur000195s00012866 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11650.1 | 4.00E-76 | osmotin 34 |
| NR | AFK46418.1 | 1.91E-120 | unknown [Medicago truncatula] |
| Swissprot | tr|E3SU11|ALL13_OLEEU | 1.00E-96 | Thaumatin-like protein (Precursor) |
| trEMBL | tr|G7KDF3|G7KDF3_MEDTR | 7.00E-121 | Uncharacterized protein {ECO:0000313|EMBL:AFK46418.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 232325 | 239042 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012866.1 | PF00314.12 | Thaumatin | 46 | 239 | 3.10E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 89.434 |
| SRR1783600 | control | 90.693 |
| SRR1783602 | moderate drought stress | 114.615 |
| SRR1811619 | moderate drought stress | 114.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.109 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.281 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.027 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.009 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 95.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 95.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 240.293 |
| SRR2868004 | Drought Stress (root) | 660.216 |
| SRR2967015 | Control (root) | 382.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 82.387 |
| SRR9715740 | Leaf | 76.967 |
| SRR9715741 | Leaf | 87.489 |
| SRR9715739 | Root | 217.399 |
| SRR9715742 | Root | 72.556 |
| SRR9715743 | Root | 89.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 468.365 |
| SRR8749028 | MeJA induced 9h | 1407.968 |
| SRR8749029 | MeJA induced 9h | 825.708 |
| SRR8749030 | Uninduced | 3128.234 |
| SRR8749031 | Uninduced | 2683.903 |
| SRR8749032 | Uninduced | 2566.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 337.096 |
| SRR8400027 | Control - Root | 243.268 |