Gene detail information of Glyur000195s00012861.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11680.1 | 4.00E-82 | Zinc finger, C3HC4 type (RING finger) family protein |
| NR | XP_004511598.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Cicer arietinum] |
| Swissprot | tr|Q9LN71|RING1_ARATH | 2.00E-131 | E3 ubiquitin-protein ligase At1g12760 |
| trEMBL | tr|I1MUQ6|I1MUQ6_SOYBN | 6.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G13980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 209483 | 214452 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012861.1 | PF13639.1 | zf-RING_2 | 354 | 396 | 3.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.661 |
| SRR1783600 | control | 9.631 |
| SRR1783602 | moderate drought stress | 15.440 |
| SRR1811619 | moderate drought stress | 15.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.773 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.454 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.991 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.430 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.218 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.030 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.276 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.202 |
| SRR2868004 | Drought Stress (root) | 35.492 |
| SRR2967015 | Control (root) | 38.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.503 |
| SRR9715740 | Leaf | 17.955 |
| SRR9715741 | Leaf | 17.795 |
| SRR9715739 | Root | 31.294 |
| SRR9715742 | Root | 23.408 |
| SRR9715743 | Root | 24.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.829 |
| SRR8749028 | MeJA induced 9h | 24.323 |
| SRR8749029 | MeJA induced 9h | 21.201 |
| SRR8749030 | Uninduced | 13.861 |
| SRR8749031 | Uninduced | 22.517 |
| SRR8749032 | Uninduced | 16.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.722 |
| SRR8400027 | Control - Root | 20.901 |