Gene detail

Gene detail information of Glyur000195s00012859.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23050.2	5.00E-122	PAS domain-containing protein tyrosine kinase family protein
NR	XP_006573761.1	0	PREDICTED: RGS domain-containing serine/threonine-protein kinase A isoform X1 [Glycine max]
COG	YP_001958461.1	1.00E-40	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	2.00E-105	Serine/threonine-protein kinase EDR1
trEMBL	tr\|K7K556\|K7K556_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G42610.2}

Sequence

Transcript Sequence

>Glyur000195s00012859.2
AATTTTTCCTTTTCTTTTTAGACAAAATTGTCACCTCTAGTGAAATTGTTTTCATCCCGGGGCCTATTAGTGATTAATGAAAAGAAGCAAATTAGCCAATCCATCAATAGCATTTTCGATTTTCTGATCAGCCAATAGCACTCTAGCACGGTCCCGAGGGTCACAGAACGCGGCACGGTTTCAAGAGATGCTATTGGTTGTTCCTTCCGGCAACTCAATACCTGTCCGCACCTGATACCTTCCCCCGCCGGCACCCGACACGTAGCAAACCGCCTTTAGCCCCAAGGTTCACAGACAGAGACGCAGTGGCAAAAAAAATAATAAAATAATAAAAAAACAAATGGTTTATGTGCAGAAGCCAAGTGAGGAAGCGGAGAATAAACTAATGAACGGGCAACCTGTAACGCGCATTGCACGCCGCAGAAGCAGAAGCGAAAAGGCTCCGGCGACTTCAATGGGCGGCGAGGAGAGAGAAAACAGTGCGTACCAGGTTCTGGTGGATCGGTGTCGGAGCCTGGAGGAGAATCAAGCCAAGCTGAGAGAGCAGTTCGATGAGTTGGTACTTCAGAATAAGAAGCTCACGGTCAGGGACGATGAACAAGTAATCGCAGATTCAACCGCGGGTTCACTTTCCAGTTTCTTCTTCTCTGGAAGTCCCTATGCAAGTGTGTTGAAATGCATGGGCCACGCCGTTCATGTCCACAGAGTTTCCTCCGGCGAGATCATATACTGGAATCATTCGGCGGAAACTCTGTACGGATGGAAGGACTATGAAATCATTGGACAAAGAATAGCTGAGTTCCTAGTTGCTGAGGAATATTATGCATCTCTACAGAAAATTCTAGAACGGTTGATCACCGGAGTGCCATGGTCTGGACAGTTTCCTTTCAAGAAGAGGTCGGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGGTGGTGAGCTTGTTGGTGTTATCACCGTTTCAAGTGATGCAGCTGTATTTAACTCTATAGATTCGGAAAATCGAAGGACTCGCCAATCTGGTGCCAATGGCCAACCTGGAGTACAGAGGTTAAACTTAAAAAGGATTCAGTGGCCTCCACGGCCGTCGATTGCACCAATGCCACAGATTGCATCATCTGTTTCTAATCTGCCATCAAAGTTTCTCCCACTCCGGCATACAGATGATTCAGTTTCCAAGAATACTTCAACAGATGAAAAACTATGGAAGCGTAACATTTATGAAACAAAATCTCATTCCAGAAGTAACCATAAAGAAAACACAACTGTCAGGGAGGCCTCTGAGAAGGATGAGTCTACTACTGAATGTGGCCAACCTTCTAAAATTGCAGCTAGAGTCCTTGCTAAGCTTCAAATTGGGGGAAGTGGAAAATGTGGGAAGGATACTGGAAGTATTAAAGATAGTTGCACAACTGACGATAATTCAGGAAGCAATAGAGTAAGTCATGAAAACNATTCATCTGGAGGTTCAGTGGCATTAACTTCACACCAGGACATTTCTAATGGAGTAGTTAAAGAAGAAAATCTCCAGAAATGCAATTCTTTATTTGCTATGAATAGAGAAGACACAAAAAATTCTGCACATATAACTTCCACTGTTTTCGAAGATAGTTCTGCTAAACCTTTCTCAGAGGACTGTTGTGCATGTTTTGGTTCTCCCATTCCCCAAGAGCCATTGTTAAGATTACGCAGTCAATTTGATCCAAATAAACTGGAGCCAGAAGCAGCAAATATGGTGATGGAAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCAATTGCCAAGTTCGAGGGAGAGTATAGGTAGCCATGAGAGTTCATCAAGCAAAGGGGATAGTGAGTCAAACTCTGTTGTAGATTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAGGAGATTGGACAAGGTTCTTATGCTGTTGTTTATCATGGAATCTGGAATGGATCGGATGTTGCCATCAAGGTTTACTTCGGGAATGGATACACANAGGAGATTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATAGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAGAACACTTCACAAGAGCAATCAGACATTAGACATCAGAAAGCGTCTAAGGATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATAGTGCATAGAGACCTAAAGTCTTCTAACCTGCTTGTTGATAAAAACTGGACTGTTAAGGTTGGAGACTTTGGCTTGTCGAGGTTGAAGGATGCAACTTTATTGACTACCAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTCCGCAATGAACCTTCAAATGAGAAGTCTGATGTGTTCAGTTTTGGTGTCATCCTGTGGGAACTAATGACTCAATCCATTCCATGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGACCCCCATATAGCATCAATCATAAATGACTGCTGGCAAAGTGATCCAGAACAACGCCCATCATTTGAAGAGCTAATACAGAGAATGATATTCGTTCTCAACAGAGTAACCTCGGTGTCAATAAAGAGAATTGCAGAATCCTAAGCATGTTATGTGGTTTAAGCTAAATTACAGGTTATTATGGAAATCAAAGGTAAAAAGACAACAAATTGAGTGGCAAACTGCAAATAGTTATTCCTTCCGAAAGTGGAACGACGACACAAGGGAGAGTAATGGAAGAAGGACCCCAAATAGGGGATTGAATTGAATAGCAGGTAACTTATTGTCATCCGAGTCACTATTAAAGTATTGAATTCGTGATGCTATTGTGGCTTCATTCACTGGTTTGTGGATATAAGGTGACCAGCTAGAGATGATGTTGACCCATGCCTTGCTCCTTTTCTGTGAGGTGTGTAACAGAATAGGTTTCTCTTTTGGGCGAGGATTCCAATTGAATCCATTTTCCCCTTTGACAACGATTACTTAATTAATTCGGGGCAATTTATATCTGCACATACATATTTTGCTATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00195	200333	207646	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004871 signal transducer activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000195s00012859.2	PF13426.1	PAS_9	125	215	6.70E-12
Glyur000195s00012859.2	PF07714.12	Pkinase_Tyr	519	770	9.10E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.827
SRR1783600	control	0.822
SRR1783602	moderate drought stress	0.860
SRR1811619	moderate drought stress	0.853

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.292
DRR006520	Root Summer glycyrrhizin high producing strain	1.293
DRR006521	Root Winter glycyrrhizin high producing strain	4.127
DRR006522	Root Winter glycyrrhizin high producing strain	3.969
DRR006523	Root Summer glycyrrhizin low producing strain	5.187
DRR006524	Root Summer glycyrrhizin low producing strain	5.255
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.052
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.987

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.665
SRR2868004	Drought Stress (root)	23.624
SRR2967015	Control (root)	23.553

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.974
SRR9715740	Leaf	2.163
SRR9715741	Leaf	4.754
SRR9715739	Root	0.126
SRR9715742	Root	1.785
SRR9715743	Root	1.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.711
SRR8749028	MeJA induced 9h	22.083
SRR8749029	MeJA induced 9h	12.576
SRR8749030	Uninduced	5.162
SRR8749031	Uninduced	8.861
SRR8749032	Uninduced	5.952

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.935
SRR8400027	Control - Root	7.802