Gene detail information of Glyur000195s00012858 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11720.1 | 0 | hapless 2 |
| NR | XP_004512192.1 | 0 | PREDICTED: protein HAPLESS 2-like [Cicer arietinum] |
| Swissprot | tr|F4JP36|HAP2_ARATH | 0 | Protein HAPLESS 2 (Precursor) |
| trEMBL | tr|G7KDG2|G7KDG2_MEDTR | 0 | Hapless protein {ECO:0000313|EMBL:AES94097.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 181710 | 190783 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012858.1 | PF10699.4 | HAP2-GCS1 | 295 | 343 | 3.90E-19 |
| Glyur000195s00012858.2 | PF10699.4 | HAP2-GCS1 | 288 | 336 | 3.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.611 |
| SRR1783600 | control | 1.468 |
| SRR1783602 | moderate drought stress | 1.922 |
| SRR1811619 | moderate drought stress | 1.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.073 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.855 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.803 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.937 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.235 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.504 |
| SRR2868004 | Drought Stress (root) | 1.221 |
| SRR2967015 | Control (root) | 1.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.149 |
| SRR9715740 | Leaf | 0.043 |
| SRR9715741 | Leaf | 0.014 |
| SRR9715739 | Root | 0.059 |
| SRR9715742 | Root | 0.316 |
| SRR9715743 | Root | 0.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.280 |
| SRR8749028 | MeJA induced 9h | 3.124 |
| SRR8749029 | MeJA induced 9h | 5.497 |
| SRR8749030 | Uninduced | 2.983 |
| SRR8749031 | Uninduced | 3.140 |
| SRR8749032 | Uninduced | 2.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.186 |
| SRR8400027 | Control - Root | 3.905 |