Gene detail

Gene detail information of Glyur000195s00012857.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12740.1	0	cytochrome P450, family 87, subfamily A, polypeptide 2
NR	XP_007158463.1	0	hypothetical protein PHAVU_002G154400g [Phaseolus vulgaris]
COG	YP_007055574.1	4.00E-43	cytochrome P450 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q7XU38\|C87A3_ORYSJ	0	Cytochrome P450 87A3
trEMBL	tr\|V7CJU0\|V7CJU0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30457.1}

Sequence

Transcript Sequence

>Glyur000195s00012857.1
ATGGGTTTGCCCCTTCTGGGTGAGACCCTTCAATTCTTTGCCCCCAACACTTCTTCTGATATTCCTCCATTTGTCAAGCAGAGAATGAAAAGGTATGGACCAATCTTCAAGACCAACTTGGTTGGAAGACCAGTTGTAGTGTCCACAGACCCGGATCTTAATTACTTCATATTCCAACAGGAGGGACAATTGTTCCAGAGCTGGTACCCAGATACATTCACTGAGATCTTTGGGAAACAAAATGTAGGTTCCTTACATGGGTTCATGTACAAGTACCTTAAGAACATGGTACTCAATCTGTTTGGTCCTGAAAGCCTCAAGAAGATGCTCTCAGAGGTTGAACAGACAACGTGCAGAACATTACAGCAGTGGTCGTGTCAGGACAGTGTTGAGTTGAAGGAAGCAACAGCAAGGATGGTATTTGATTTGACTGCAAAGAAACTTATCAGTTATGATTCGACCAAGTCCTCGGAGAATTTAAGGGACAACTTTGTTGCATTCATACAAGGACTTATCTCGTTCCCGCTTGACGTTCCAGGAACAGCTTATCACAAATGTTTGCAGGGAACAGTACTCACTGAAGCGATCGCTCTGGACCTCATGTTTGTGCTCCTCTTTGCAAGCTTTGAAACCACTTCTCTGGCTCTCACTTTTGCCATAAAATTACTCTCTGACCATCCCTTGGTGCTCAAGCAATTACAAGAAGAACATGAAGCCATCCTCAAACGACGTGAAGATCCTAACTCCGGAGTCACGTGGCAAGAATACAAATCAATGACCTTTACATTTCAGTTCATAACTGAAACCATGAGACTCGCAAATATAGTTCCAGGAATCTTCCGGAAGGCACTAAGGGAAATTAATTTTAAGGCAGGCTGGGCAATCATGGTGTGTCCCCCAGCTGTACACTTGAACCCGGCGAAATATCAGGATCCTCTTGCCTTCAACCCATGGAGATGGGAGGGAGTGGAACTGAATGGTGCCAACAAACATTTCATGGCTTTCGGTGGAGGCATGAGATTTTGTGTTGGGACAGACTTCGCTAAGGTTCAGATGGCTGTTTTTCTTCATAGCTTGGTAACAAAGTACAGGTGGCGACCCATCAAAGGAGGGAATATTGTTCGAACTCCTGGTTTACAATTTCCAGATGGCTTTCACGTCCAAATCATGGAGAAAGATCAAACGAAGCACGAACCCAACATACCATTACAAATTAGAAACCGAGAAGCTCCTCAAGAAAGATTCATGGTAGAAATTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00195	178638	181421	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP87A2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000195s00012857.1	PF00067.17	p450	3	171	3.70E-08
Glyur000195s00012857.1	PF00067.17	p450	192	375	3.20E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.921
SRR2868004	Drought Stress (root)	5.137
SRR2967015	Control (root)	3.674

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.028
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.037
SRR9715739	Root	0.000
SRR9715742	Root	0.014
SRR9715743	Root	0.037

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.568
SRR8749028	MeJA induced 9h	5.497
SRR8749029	MeJA induced 9h	5.031
SRR8749030	Uninduced	0.413
SRR8749031	Uninduced	0.510
SRR8749032	Uninduced	0.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.271
SRR8400027	Control - Root	0.483