Gene detail information of Glyur000195s00012856 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11740.1 | 1.00E-105 | Ubiquitin-like superfamily protein |
| NR | KHN34429.1 | 0 | FAS-associated factor 2-B [Glycine soja] |
| trEMBL | tr|I1K0C8|I1K0C8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G03480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 166991 | 171346 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012856.1 | PF14555.1 | UBA_4 | 6 | 46 | 4.10E-12 |
| Glyur000195s00012856.1 | PF00789.15 | UBX | 503 | 584 | 2.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.216 |
| SRR1783600 | control | 40.385 |
| SRR1783602 | moderate drought stress | 47.719 |
| SRR1811619 | moderate drought stress | 47.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 60.496 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.641 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 124.303 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 121.097 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 75.266 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 75.346 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.888 |
| SRR2868004 | Drought Stress (root) | 46.861 |
| SRR2967015 | Control (root) | 62.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.239 |
| SRR9715740 | Leaf | 14.756 |
| SRR9715741 | Leaf | 11.777 |
| SRR9715739 | Root | 15.454 |
| SRR9715742 | Root | 25.777 |
| SRR9715743 | Root | 24.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.989 |
| SRR8749028 | MeJA induced 9h | 54.184 |
| SRR8749029 | MeJA induced 9h | 51.891 |
| SRR8749030 | Uninduced | 58.733 |
| SRR8749031 | Uninduced | 54.077 |
| SRR8749032 | Uninduced | 46.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.667 |
| SRR8400027 | Control - Root | 44.157 |