Gene detail

Gene detail information of Glyur000195s00012853

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23030.1	1.00E-166	MATE efflux family protein
NR	XP_004511602.1	0	PREDICTED: MATE efflux family protein 5-like [Cicer arietinum]
COG	YP_003264696.1	1.00E-33	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SIA3\|MATE6_ARATH	9.00E-75	MATE efflux family protein 6
trEMBL	tr\|G7KDH1\|G7KDH1_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000195s00012853.1
ATGTGCCCGTTATCATCTACCACCTCTAGTACTTTCTGTGAAAGCAATAAGGGCCAGCCAATTATACCCACCACAACCAAAACAACACTACAGGGGCCTGACATGTTCACCCTTTTGATCCCCAAATCCCCAACATTAGAACAACAATTCCAAAAGCCCCAAAAGAGCCACTTCTTCTCTCTGGCCCTCAATGAAGCCAAGTGCATAGCGCAAATATCATTGCCCATGGTGTTAACTGGTCTATTACTCTACTCTCGCTCCATAATCTCCATGCTCTTCCTCGGTCGTGTAAGTGAGCTTGCCTTGGCAGGTGGGTCCCTCGCAATTGGATTCGCTAACATCACCGGCTACTCCATTCTCTCTGGCCTCGCCATGGGGATGGAACCAATCTGTGGCCAGGCTTTCGGGGCCAAGAGATTCAAACTCCTTGGCCTCGCGATGCAGAGGACAGTGGTTCTCCTTCTCCTCACCTCAGTTTTCATCTCATTCTTGTGGCTCAACATGAAGACAATATTGCTCCTCTGTGGCCAACAAGAAGACATCGCTACAGAAGCCCAATCCTACATTCTCTACTCTCTTCCCGATCTCGTGGCACAATCGCTGCTACACCCTTTACGAATCTACCTGAGAAGCCAATCCATAACCCTGCCTCTAACATTCACCGCCTCTCTCTCCATTCTCCTCCACGTCCCNATCAATTACCTCCTAGTCTCCGTGCTCAACCTCGGAATCAGAGGCATTGCCTTAGGCGCTGTTTGGACGAATTTCAACCTCGTGGTGTCGTTGATTCTCTACATCTGGGTCTCAGGCACACACAGGAAGACGTGGACGGGTATTTCCTCTGCTTGCTTCAAGGGATGGAAATCGCTTTTGAATTTGGCAATCCCAAGCTGCATTTCGGTTTGTCTCGAATGGTGGTGGTACGAAATCATGATTCTGCTTTGNGGATTATTGATCAACCCACACGCAACCGTTGCATCCATGGGTGTTCTGATTCAAACCACTGCATTGATATACATTTTCCCTTCTTCGTTGAGCTTTGGTGTTTCCACGAGGGTTGGGAATGAACTGGGAGCAGAGAATCCCCAAAGGGCGAAACTCGCGGCACTTGTGGGACTCTGTTTCAGTTTCGTGCTTGGATTCTCTGCTTTGTTGTTTGCGATTTCGGTGAGGCACGTGTGGGCTTCGATGTTCACNCGTGACACGCAGATCATTGCATTGACGTCGATGGTGTTGCCAATCATTGGGCTCTGTGAGCTTGGGAACTGCCCGCAAACGACGCTGTGTGGGGTTTTGAGGGGAACNGCGAGGCCCAAGTTGGGAGCGAATATAAACTTGGGTTGCTTTTACCTTGTGGGAATGCCCGTTGCGGTGTGGCTTAGTTTCTTTGCTGGGTTTGATTTCAAAGGCTTGTGGCTTGGCCTTTTGGCTGCTCAGGGAGCGTGTATGGTTGCAATGTTGTTCGTTTTGGCTCGCACGAATTGGGAAGGTCAAGCACAAAGAGCCAAGGAGCTCACAGCATCTGATCCTAGCGATGAATTAGGACAACAGAAGGTGGTGGTGGAGGAGGAAGAGGAGGAACAACAAGATGATGAGAATTGCTCCCTGTTGAGTTCATGTGCCACAGTAGAATGCTCTGTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00195	158292	159935	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000195s00012853.1	PF01554.13	MatE	75	235	1.90E-30
Glyur000195s00012853.1	PF01554.13	MatE	296	458	1.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.237
SRR1783600	control	0.241
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.941
DRR006520	Root Summer glycyrrhizin high producing strain	5.163
DRR006521	Root Winter glycyrrhizin high producing strain	0.676
DRR006522	Root Winter glycyrrhizin high producing strain	0.562
DRR006523	Root Summer glycyrrhizin low producing strain	107.536
DRR006524	Root Summer glycyrrhizin low producing strain	104.377
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.226
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.225

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.296
SRR2868004	Drought Stress (root)	2.918
SRR2967015	Control (root)	4.424

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.482
SRR9715740	Leaf	2.646
SRR9715741	Leaf	12.706
SRR9715739	Root	39.622
SRR9715742	Root	74.793
SRR9715743	Root	63.274

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.695
SRR8749028	MeJA induced 9h	1.326
SRR8749029	MeJA induced 9h	3.405
SRR8749030	Uninduced	9.879
SRR8749031	Uninduced	7.087
SRR8749032	Uninduced	14.936

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.000
SRR8400027	Control - Root	4.490