Gene detail information of Glyur000195s00012851.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12610.1 | 7.00E-32 | Integrase-type DNA-binding superfamily protein |
| NR | AHI45172.1 | 4.32E-92 | DREB group protein [Ammopiptanthus mongolicus] |
| Swissprot | tr|Q9LN86|DRE1F_ARATH | 5.00E-62 | Dehydration-responsive element-binding protein 1F |
| trEMBL | tr|W5ZSI5|W5ZSI5_9FABA | 2.00E-92 | DREB group protein {ECO:0000313|EMBL:AHI45172.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 131634 | 132452 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012851.1 | PF00847.15 | AP2 | 75 | 127 | 1.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.186 |
| SRR1811619 | moderate drought stress | 0.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 120.039 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 119.555 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.952 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.931 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 408.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 407.619 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.346 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.391 |
| SRR2868004 | Drought Stress (root) | 9.798 |
| SRR2967015 | Control (root) | 91.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 107.775 |
| SRR9715740 | Leaf | 42.039 |
| SRR9715741 | Leaf | 75.173 |
| SRR9715739 | Root | 682.999 |
| SRR9715742 | Root | 703.080 |
| SRR9715743 | Root | 664.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 252.333 |
| SRR8749028 | MeJA induced 9h | 218.087 |
| SRR8749029 | MeJA induced 9h | 148.784 |
| SRR8749030 | Uninduced | 62.590 |
| SRR8749031 | Uninduced | 6.325 |
| SRR8749032 | Uninduced | 27.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.421 |
| SRR8400027 | Control - Root | 11.482 |