Gene detail

Gene detail information of Glyur000195s00012846

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63020.2	0	nuclear RNA polymerase D1A
NR	XP_004511611.1	0	PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5 [Cicer arietinum]
COG	YP_008797579.1	1.00E-54	DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum subterraneum]
Swissprot	tr\|Q9LQ02\|NRPD1_ARATH	0	DNA-directed RNA polymerase IV subunit 1
trEMBL	tr\|G7KER5\|G7KER5_MEDTR	0	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}

Sequence

Transcript Sequence

>Glyur000195s00012846.1
ATGCAAAAGCAAGGGTTATATATGATGACTAACCTAGAGACACGAACCGAACCTAAAAAGCACCCTGACCTTTTTCTCTCGTCCTTGCCTCGGTCTCCCCAAGTCCTTCCCCGTTCTCAACACAGCAAGNCGACCGGCGGCGTTCTGTTTCGCTCTTCATTCCTCTTTCACTCCACACTCCCACACAACACACTAACTCAAACTCTCAGCTCTTTCTCTCTGCGATTTCGAGGGAGAGCGAAGCTCACTTCATCATTGACTGTGTCCTGTGTCTCCGCATTCATTCGTTTCACTCAAGTTATCCCGAAATCTTCTGGGCGTGAGATTGGTTCCTTTGGGGCTTTGGGCACAGAGAGTGATACAGTGTGGCCCTTCTCGCGAGTGGCATATATAGCACGAACCTGGGAGCGCAGCTTATCACTGCGCCCAAGTTTTTTGTTATTGAATTCCATGGATGATGATGACGTTTCTCATGAGCACAAAGTGCCATCTGGTCTCATAACAGCGATAAAGTTTGATGTTTTAACCGGGAGAGATATAGAGAAGATCTCTGCTCTGGAGATAAATGCAGTCGGACAGGTCACTTGTTCTGATTTGGGACTTCCAAATACATCTTTTGAGTGCACCACATGTGGTTCAAAAGATAGAAAGTTCTGTGAAGGTCATTTTGGAGTAATCAGATTTCCTTTTGCCATATTACATCCATACTTTATGTCAGAGATTGTAGAAATCTTAAACAAGATTTGCCCTGTATGCAAATCTATTCGACGTGACTTACGGATGAAGGTCAGATATCTTTTACTCATACCAAATAGTAATAAAGTTCATCTGGGAAATGGTATGAGTCGATATCCAACTATGAAATTTAGAGTTTCTTCCAATGATTTCTTCAGAAGAACTGCGATTATTGTTGAAGTAAGTGATATGACGCTAAAGAAAAAAAGAACTTCGTGGCGAAGTTTGCCTGCTGATTATTGGGATTTTATTGCTGGAGATGCTCAACATAATCAACCAGAAGAAACTCATGTAAATAGAAGGGTTTTATCACCTGTTCAGGTTCAGTCTTTGCTGAGTGATGTTGATCCAAACTTTATTGAAAAGTTTATTCCAAGAATGGATTTGGTTGATCTCAGTTGCTTCCCAGTGACACCAAATTGTCTTCGTGTAACAGAAGTCACTCATGGATTTTCAACTGTATATCCATTGAGTTATGATGACAGGACCAGGGCTTGTAAGAAATTGGTTGATTTCCGGGGTACAGCGAATGAGTTAAGTTCTCGTGTTTTGGACTGCCTGAGGTTTTCCAAGGCAAGCTGTTCTGCTGTTTTACCCCTTTTCCCCCTATTTGTCAAAATTCTGCCTTGTGCTTATGATTTTACTTTTAAAATGCAGCTACATCCTGATAAAACACCAAGCAATATTTTTACTGATCTCCAACAAAGAAAGGTTGGAGAAAATGCTTGCAAATCTTTTGGTTTACGATGGATGAAAGATGTGGTTCTTGGAAAACGCAATGATAGTTCCTTCCGTACTGTAGTTGTCGGTGATCCAGACCTGGGGCTTAGTGAAATTGGTCTACCTTGTCAAATTGCAGAAAACTTGCAGGTCTCTGAGTATGTGAATAGGCATAATAAGGAAAAATTGCTTTATTGTTGTGAGCTACGCTTGTTAGAGAAGGGACAAATAAATGTTTGCAGAAACGGTAAAGCAGTTGTTCTGTATAAAAAGGAAGAGGTACAGATAGGAGACATATTTTATAGGCCCCTTGGTGATGGGGACAAAGTGTTGATAAATAGGCCTCCTTCCATACATCAACATTCTATGATTGCTCTCACGGTTAGGGTCCTTCCGATATCTTCTGTTGTATCTATTAACCCACTGTGTTGTTCACCACTGCGTGGGGATTTTGATGGTGATTGCCTTCATGGGTATATTCCACAATCAGTTAGCTCAAGAATTGAGCTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCATATTTGCTGTTGGAAGATGGGGTCCTTTTGAATGTTTACCAAATGCAGCAGCTTCAAATGCTTTGCAGTAAAAAATTAACACCTCCTGCAATTGTAAAAGCTCCTTCAAGTAATACCTCATTTTGGAGTGGCAAGCAATTGGTCAGCATGCTGTTGCCTTCCAATTTTGACTATTTTTTTCCTTCAAATGGTGTTTTTGTTAGTGANGGGGAGCTTATATCTTGTTCTGAGGCTTCTGGGTGGTTACGTGATTCAGAAAACAATGTTTTCCAGAGTCTTGTGGAACATTTTCAAGGGACGACTTTAGACATTTTATATGGTGCGCAGAAAGCTCTTTGTGAATGGTTGTCTATGACAGGGTTTAGTGTTTCCCTCTCAGACTTGTACCTTTCTTCGGATTCCTCTGCAAGGAAAAACATGATGGATGAAATCTCCTATGGCTTACAAGAAGCAGAACAGGCCTGCGATTTCAATCAGTTATTGGTGAATTATTTTGGTGATTTTCTTTCAGGAAGTCTTCAAGAGAATGAAAATTTTGAGACTGTTGATGTGGATCGTCTGAATTATGAAAGGCAAATATCTGCTACTCTCAGTCAAGCATCAGTTGATGCTTTTCGACATGTTTTTCGCAATATTCAAAGTTTAGCTGATAAATATGCATATAAGGACAATACTTTCCTCGCTATGTTTAAGGCTGGAAGCAAGGGTAACTTGCTGAAATTAGTGCAACATTCCATGTGCCTTGGACTGCAACATTCTCTGGTTCGCTTGTCCTATAGAATTCCCCGAAAACTCTCATGTGCTGCTTGGAACAGTCAAAAGGGACTTGATTCTGTGCAGATGTTTTCTGATACTCTTGAATCTGTCCAGTCTTACATTCCATATGCTGTGGTTGAAAGCTCTTTTCTTACTGGGTTGAATCCACTTGAATGTTTTGTCCATTCAGTGACAAATCGCGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGAACATTGACACGTAGACTTATGTTCTTCATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATACTGATGATGATTCATCTTGTGGTAGCTGTTTCCGAGAGGATACACTAGGTGGTGAACCAGTTGGAGCACTTTCCGCTTGTGCGATTTCTGAAGCTGCTTACAGTGCTTTGAGCCAACCAATTAGTCTACTTGAAACATCACCTTTGCTGAATTTAAAAAATGTTCTTGAGTGTGGTTCAAGGAAGAAAGGTGGTGACCAGACGGTGTCTTTATTTTTGTCTGAGAAACTGGGTAAACAGAGAAATGGGTTTGAGTATGCAGCACTAGAAGTTAAGAATTATTTGGAAAGATTGATGTTCTCAAACATTGTTTCTACTGCCATGATAATATTCACCCCACAGTCTTGCAGCCTAGAAAAGTACAGTCCTTGGGTTTGCCATTTTCACCTAGACAAGGAAAATGTCACACGAAGAAATTTAAAAGTGCATTTTATCATTGACTCTCTTAACCAGCAATATGACTCCCTAAGAAAAGAGTCAAAAGTCACTCTTCCCAATTTGAAAATATCAAGCAAGAAGTGTTCGGTAGATTACATGGCTAAGGAACACAGAGAAACATATTTAAATGAAGAAAAGGAGGATGAAGATTGCATCACTGTCGCAATTGTTGAAAATTCTAAGAATTCTGTACAACTGGATGCTGTACGGGATACATTGATACCTTTCCTTCTAGGAACAGCTATAAAAGGATTTCTGGAGATTAAGAAGGTTGATATTCTGTGGAATGATCTGTCAAAAGGATCAAATTCTTATAATGGTTCTTCTGGTGAACTATACTTGAGGGTTACCATGTCCTGTGACAGTGGCAGTGGAACATTCTGGGGTACACTCATAAATCTTTGTCACAAGATAATGCCAATGATTGACTGGACACGAAGTCATCCAGATAACATTCACCATTTCTGCTCAGCCTATGGAATCGATGCAGGGTGGCAGTATTTTCTCCATAATTTGGCATCTGCAACATCTGATACTGGCAAGTCAATCCTTCCTAAGCATCTGCATCTTGTTGCTAATAGTCTGTCAGCTAGCGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCACGACAAAGAAAACATGCATCTGTTTCATCACCCTTTGTGCAAGCGTGCTTCTCTAATCCAGGTAGTTCCTTTATAAAAGCTGCCAAGTCTGGAATCATGGATAATCTCCAGGGCAGCTTAGATGCATTGGCTTGGGGAAACTGTCTGTCCATGGGGACAAGTGGACAGTTTGATATCATATATTCAGAAAAGGTACAAGAGCTTGCTAAGCCTGTAGATGTGTATAGCCTGCTAGAAACCAGTTCTTTCCCACTGAACTTTGAGGTTGATTCTCTTCATTCTCAAAAGTATTCATCCGACAAATGCAATTCTGAGTTTAGGTATAAAGATGGTGGTTATGCTTTGAAAGAGTGTAAGCAGTGGAAAAGCATTGTAAGAAATTTCTTGACTGTAAATGATATTCAGAAGCTCAGTTCTGCATCAAGGAGCATATTGAAAAAGTATTCGATTGATCAGGTACTAAGCGAGAAGGACAAGTTAACAATAATGAAGGTTTTGCATTTTCATCCGCATAGAAATGAGAAGTTTGGCTCTGGACCAGAAGACATAAAGGTTGGCTGGCACCCAATACATAAGAGTAGCCGCTGCTTCCATATAATACGAAATGATGGGACTGTTGAAGATTTTTCATACCACAAATGCATCCAGGGTGCTCTTGAGATTGTTGATCCAGAAAAGTTAAAGAGCCAGAAGAAAAAATGGTGGGGGCATGATGACATATTGGTTTTGTGGCAACAAGGGGTTGTGATCCGATTGAGAGGAGCACGATGGCCTCTTATCCAACCACTCCAGACGCAGTAG

Protein Sequence

>Glyur000195s00012846.1
MQKQGLYMMTNLETRTEPKKHPDLFLSSLPRSPQVLPRSQHSKXTGGVLFRSSFLFHSTLPHNTLTQTLSSFSLRFRGRAKLTSSLTVSCVSAFIRFTQVIPKSSGREIGSFGALGTESDTVWPFSRVAYIARTWERSLSLRPSFLLLNSMDDDDVSHEHKVPSGLITAIKFDVLTGRDIEKISALEINAVGQVTCSDLGLPNTSFECTTCGSKDRKFCEGHFGVIRFPFAILHPYFMSEIVEILNKICPVCKSIRRDLRMKVRYLLLIPNSNKVHLGNGMSRYPTMKFRVSSNDFFRRTAIIVEVSDMTLKKKRTSWRSLPADYWDFIAGDAQHNQPEETHVNRRVLSPVQVQSLLSDVDPNFIEKFIPRMDLVDLSCFPVTPNCLRVTEVTHGFSTVYPLSYDDRTRACKKLVDFRGTANELSSRVLDCLRFSKASCSAVLPLFPLFVKILPCAYDFTFKMQLHPDKTPSNIFTDLQQRKVGENACKSFGLRWMKDVVLGKRNDSSFRTVVVGDPDLGLSEIGLPCQIAENLQVSEYVNRHNKEKLLYCCELRLLEKGQINVCRNGKAVVLYKKEEVQIGDIFYRPLGDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVSSRIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLLEDGVLLNVYQMQQLQMLCSKKLTPPAIVKAPSSNTSFWSGKQLVSMLLPSNFDYFFPSNGVFVSXGELISCSEASGWLRDSENNVFQSLVEHFQGTTLDILYGAQKALCEWLSMTGFSVSLSDLYLSSDSSARKNMMDEISYGLQEAEQACDFNQLLVNYFGDFLSGSLQENENFETVDVDRLNYERQISATLSQASVDAFRHVFRNIQSLADKYAYKDNTFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRKLSCAAWNSQKGLDSVQMFSDTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDTDDDSSCGSCFREDTLGGEPVGALSACAISEAAYSALSQPISLLETSPLLNLKNVLECGSRKKGGDQTVSLFLSEKLGKQRNGFEYAALEVKNYLERLMFSNIVSTAMIIFTPQSCSLEKYSPWVCHFHLDKENVTRRNLKVHFIIDSLNQQYDSLRKESKVTLPNLKISSKKCSVDYMAKEHRETYLNEEKEDEDCITVAIVENSKNSVQLDAVRDTLIPFLLGTAIKGFLEIKKVDILWNDLSKGSNSYNGSSGELYLRVTMSCDSGSGTFWGTLINLCHKIMPMIDWTRSHPDNIHHFCSAYGIDAGWQYFLHNLASATSDTGKSILPKHLHLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFIKAAKSGIMDNLQGSLDALAWGNCLSMGTSGQFDIIYSEKVQELAKPVDVYSLLETSSFPLNFEVDSLHSQKYSSDKCNSEFRYKDGGYALKECKQWKSIVRNFLTVNDIQKLSSASRSILKKYSIDQVLSEKDKLTIMKVLHFHPHRNEKFGSGPEDIKVGWHPIHKSSRCFHIIRNDGTVEDFSYHKCIQGALEIVDPEKLKSQKKKWWGHDDILVLWQQGVVIRLRGARWPLIQPLQTQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00195	90679	107740	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0009308 amine metabolic process

molecular_function

GO:0003677 DNA binding

GO:0003899 DNA-directed RNA polymerase activity

GO:0005507 copper ion binding

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000195s00012846.1	PF04997.7	RNA_pol_Rpb1_1	192	270	1.20E-05
Glyur000195s00012846.1	PF00623.15	RNA_pol_Rpb1_2	502	659	4.10E-31
Glyur000195s00012846.1	PF04983.13	RNA_pol_Rpb1_3	665	813	8.10E-18
Glyur000195s00012846.1	PF05000.12	RNA_pol_Rpb1_4	882	940	1.40E-09
Glyur000195s00012846.1	PF11523.3	DUF3223	1549	1622	2.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.985
SRR1783600	control	1.997
SRR1783602	moderate drought stress	1.257
SRR1811619	moderate drought stress	1.235

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.713
DRR006520	Root Summer glycyrrhizin high producing strain	1.682
DRR006521	Root Winter glycyrrhizin high producing strain	0.834
DRR006522	Root Winter glycyrrhizin high producing strain	0.747
DRR006523	Root Summer glycyrrhizin low producing strain	2.407
DRR006524	Root Summer glycyrrhizin low producing strain	2.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.844
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.801

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.528
SRR2868004	Drought Stress (root)	4.617
SRR2967015	Control (root)	4.220

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.673
SRR9715740	Leaf	0.603
SRR9715741	Leaf	0.618
SRR9715739	Root	0.490
SRR9715742	Root	3.272
SRR9715743	Root	2.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.864
SRR8749028	MeJA induced 9h	2.824
SRR8749029	MeJA induced 9h	0.937
SRR8749030	Uninduced	0.146
SRR8749031	Uninduced	0.144
SRR8749032	Uninduced	0.113

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.917
SRR8400027	Control - Root	5.409