Gene detail

Gene detail information of Glyur000195s00012843

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12570.1	0	Glucose-methanol-choline (GMC) oxidoreductase family protein
NR	XP_004511612.1	0	PREDICTED: protein HOTHEAD-like [Cicer arietinum]
COG	YP_003406370.1	4.00E-34	glucose-methanol-choline oxidoreductase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q9S746\|HTH_ARATH	0	Protein HOTHEAD (Precursor)
trEMBL	tr\|I1K0E1\|I1K0E1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G03580.1}

Sequence

Transcript Sequence

>Glyur000195s00012843.1
AATAAAGGGGCATCTAAAAGAAAGGAAAAACTACAATACATTTGGCGGTTATTAGGTGCCATTAACAAAACCCAACTGTCTTCCATCTAGAATAAATATTCTCACTTCACTCTCGGACACATTGGTGCAATAAATTAGGACTATGGGGGCGATAAACATATCACAAAGTCTGCATTTTCTTGAATCACTGTGGGCCAAGGTTCTTGTACACAACACAAACATTATTCGTAGCTTTCGTTTCGGTCTCGGCGATAAAATTTAAAGCAAGGTAATCTTTCTGCTAGTCAAAGTTATAGCCTCCGGGATCGTTGGGCTTGCAGTTTCCACTTTATATATAATCAGGGGAGAAGGGTTTGTTTGGATCAGTACAACATAAACCCAAATTCGATTCACAAGGTCCTGACAAGACTGCTGTAATGGGTGTTTGGTGGTGGAGGCTGATTCTGGTTTCTCTTGCTGCGATTCTCTTCTCTCCTAAACATTGTACTAGTACATCCGACACAGGTAGGAAATACACGTTTATGCAGAATGCAACGTCAGCTCCAAGCGTGTCCTACTATGACTACATCGTAATTGGTGGTGGCACCGCGGGGTGCCCTTTGGCTGCCACGCTGTCCCAAAACTACAGCGTTTTGCTGCTTGAACGTGGCGGGTCACCTTATGGGAACCCCAACATAACCAATCTGAGTGCCTTCGGCGCTGCGCTCTCTGACACGTCACCTTCCTCTCCCGCTCAGCGCTTCATCTCCCAAGACGTTGGTTGGGAGGGAAGGTTAGTGAATGAGTCGTACAAATGGGTGGAGAGAGTGGTGGCGTTCGAGCCAACCATGCGGCAGTGGCAGACAGCGGTTAGGAATGGATTGGTGGAAATAGGGGTGGTGCCTTACAATGGCTTCACCTACGATCATATTTATGGGACTAAGGTTGGTGGCACCATCTTTGACCAGCACGGTTACAGGCACACCGCCGCTGATCTTCTGGAATATGCCGACTCCAATCGAATTACGCTGCTCTTGCATTCCACCGTGCACAGGATCTTGTTTACCACAAAGAAAGGGGGATCAAGGCCAGTGGCGCATGGAGTAGTATTCAGGGATGCAATGGGGGTGGAACACAGGGCATACCTAAAACAGGGGCCCAGGAATGAGATCATAGTGTCAGCAGGTGCACTGGGTAGCCCACAGCTTCTAATGTTGAGTGGGATTGGAGCAGCCCATCACCTTCGGGAGCACAGCATCAGTGTGGTGCTGGACCAGCCCTTGGTGGGACAGGGAATGTCAGATAACCCAATGAACGCTGTGTTTGTCCCATCCCCTGTCCCCGTNGAGGTCTCCCTCATTGAGGTGGTTGGCATCACCAACTTTGGCAGCTACATTGAAGCTGCCAGCGGTGAAAACTTTGCCGGTGGTTCTCCTAGAGACTACGGAATGTTTTCCCCCAAGATTGGTCAATTCTCGAAGGTGCCCCCAAAGCAAAGGACCCCAGAAGCGGTGGCGAAAGCGATAGAGATGATGGAGAGCCTCGAGCAGCCAGCGTTCAGGGGCGGATTCNTTCTGGAGAAAATCATGGGTCCAATTTCAAGGGGCCATTTGGAACTCAGAAGTAACGATCCAAACGAGAACCCATCGGTGACTTTTAACTACTTCAAGGACCCCAGAGACTTGGAGAGATGCGTACAGGGCATTAGAACCATCGAGAAAATAATCGAGTCCAAGGCTTTCTCCCCATTTAGATACAACAACATGCCAGTGTCGGTGCTACTTAACATGACCGCAAGTTCCCCTGTGAATCTATTGCCCAAACACACGAATGCCTCAACGTCTCTGGAACAGTTCTGCAGAGACACCGTGATGACCATTTGGCACTATCATGGGGGTTGCCAAGTTGGCAGAGTTGTTGATAGTGATTATAAGGTTCTTGGTGTGGATGCATTGCGCGTTATCGATGGTTCTACCTTTAATTATACTCCGGGAACTAATCCTCAAGCCACTGTTATGATGCTTGGAAGGTATATGGGAGTCAAAATATTGAGAGAGAGACTTGCTGCCATCAAAACCCAGTAATATTNTTTTAAGTTGGATAAATATATAAAATAATATAATATATATGGTTTTTCTCTGTTTGATGTTTCATCAAATGGTGTGGGGTCACTGACAAAAATCAAATCTTTATTTAGTAATTTACATTTTGTCAAGTTACTCCACAGAGGATGGCAATATTGTTCTGTTCCTTTTGCTCAATTGAAGCCGAAACAATGGAGGAATCTTCTATTTCTTGTTTCATTTAGAATGGATGCATAATTTACTAGTAATTCTTTAACTCTTAATTATATTTGTAAACCAAAAAACAAAGAAAACAGGAAAATATACTTGGTGCTCTGTATACGAGGTTTGTTTGGAGTGATATGCACACACTATTGCTTTGACAGAATTTAACTAGCAGCCAGTTTGGGGCTAAAACTCTGACNCACCTTGTTCTGAGTTTGGATGGTAGTTTTGATACTTCTGATGTGCAGAAAATGTAAAAAAGAAAAAGAAGTAATTCTCACCTATAAGAATTAGTACATGAAAAAAATAGGGGATTCTTCCTTTTTTCTATTCAAGCAATTGGAGATGGAGGAGCATTCTCAGACATACAAGCTAGGTGTTTGATGATTTGTGCGACAAAACTTTATGCGCTGCTTGGGTTCTTTCTTTGCTTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00195	83491	88551	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000195s00012843.1	PF00732.14	GMC_oxred_N	183	291	6.00E-18
Glyur000195s00012843.1	PF05199.8	GMC_oxred_C	386	531	3.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.899
SRR1783600	control	1.881
SRR1783602	moderate drought stress	0.155
SRR1811619	moderate drought stress	0.154

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.643
DRR006520	Root Summer glycyrrhizin high producing strain	0.641
DRR006521	Root Winter glycyrrhizin high producing strain	0.179
DRR006522	Root Winter glycyrrhizin high producing strain	0.201
DRR006523	Root Summer glycyrrhizin low producing strain	0.902
DRR006524	Root Summer glycyrrhizin low producing strain	0.937
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.368
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.764

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.857
SRR2868004	Drought Stress (root)	1.221
SRR2967015	Control (root)	1.793

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.728
SRR9715740	Leaf	9.832
SRR9715741	Leaf	10.756
SRR9715739	Root	0.262
SRR9715742	Root	1.060
SRR9715743	Root	0.924

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.305
SRR8749028	MeJA induced 9h	0.322
SRR8749029	MeJA induced 9h	0.504
SRR8749030	Uninduced	0.185
SRR8749031	Uninduced	0.057
SRR8749032	Uninduced	0.084

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.019
SRR8400027	Control - Root	2.062