Gene detail

Gene detail information of Glyur000195s00012839.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62990.1	9.00E-128	KNOTTED-like homeobox of Arabidopsis thaliana 7
NR	XP_007158449.1	0	hypothetical protein PHAVU_002G153300g [Phaseolus vulgaris]
Swissprot	tr\|Q9FPQ8\|KNAT7_ARATH	5.00E-163	Homeobox protein knotted-1-like 7
trEMBL	tr\|V7CM51\|V7CM51_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30443.1}

Sequence

Transcript Sequence

>Glyur000195s00012839.1
CTTCACAAGAAATAAACACCCAATACAGTGACTACTAACCAGGATTGCTTGAGGCAGGTGAACCAAAAGCATGTGCAAAAAACAAATTTTNTACTGATATTCATATAGAAGATGATAAACCCAAAATTATCGTCGCCAATCAATCAATCAAATCAAGCACCTAACCTTAGCCCCAAAAAAAATCCACCAGTCTGAGAGAGAAAAACAACAATTGAAAAAAGAAAAAGAGAAAAAAGAAAGGAAAGGAAAGGAAAGAAATGAGATTGTCAGGTCACAGAAGCAGCTTTATCTCCTTTTTTTCTGACCTCGCTTCCATCTCCTTTCATAGTAATGATTCCGCAGCTTACTCTTTTCCCCTCTCCCAGTCTCTCTCTCTCTCTCTCTCTGTTTTTCTCTCCTCTCACTCCAACCTCTCTCTCTCTCTCACGCAAATAATAAAATAAAGAGAAATTAAATAAATGGATCGTTTTTTAATGCTTTTGCTTCTCCCTCTTTCTCTGGTGCGCATGTAAAGCTTTGTTCCCATCAGAAGTGGTGCAGAAAGTTTGTGTCTCAGATCCCTATAATATTACACACCGAAAACGAGATAGAGATAGAGAATACAACTCTACTGTGTCTCTCTCTGTCTCTGTTCTTCACTCTGCTTCTTCTCTCTTCCACCATATCCTCAATCTCATCCACCCTGCCAAAGTTTTTTTTTTCCCTCTAAAAAATCATCATCATATAGCATATAGCTAGAGTGGTCCTCAACCTCAGTCTCTTCTCAACACCTTTTTCCCTATACACAAATTCTGAATTCTCTGCTTTGTCTTCAACCCCCTTTTTCCCCCTTTATCACTGCAGGCAGCATAGTAAGTGCTTCCTTCATCATTTATTAATTGAAATTGAAACATCAAGAATANAGTACAGGAAAATGCAACAAGAAGCGGCGAGCTTGGGAATGATGGGTGGTGGTGGTTTTGGCGGAGAGGTGTCGGGTTCCGGCGATCACCACCACCACCGGCAACTGAAGGCGGAGATAGCGACTCACCCACTCTACGAACAGCTTCTGGCTGCACACGTGGCATGCCTCCGTGTGGCCACTCCCATCGATCAGCTACCACTGATTGATGCGCAGTTATCTCAGTCTCACCATCTTCTACGCTCTTATGTCAACCAACACACTCACTCTCTTTCTTCACCCCATGACCGTCAAGAACTTGACAACTTCCTGGCACAATATTTGATAGTTTTGTGTACTTTCAAAGAGCAGCTTCAGCAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATACCTTACAAGCTCTCACAGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCAGATGATGAAGAAGATATGCAGATGGATTTTTCTTTAGATCAGTCTAGCGCTGAAGGGCATGATCACATGATGGGATTTGGTCTTCCCACAGAGTCTGAAAGGTCACTCATGGAAAGAGTTCGTCAGGAACTCAAGATTGAGCTGAAACAGGGTTTTAAGTCCAGAATTGAAGATGTTAGGGAGGAAATATTGAGGAAACGAAGAGCTGGGAAATTACCAGGTGACACAACTTCAGTGTTGAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAAGCAAAACTCGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTCTGAAGTCCAAGCGCAAGAGGTAGCTAGATAGATCAGTCATATTTTGTTCCTAACTACATATATGGAGCAGCTAGCAAGCAACACAACTAAATATATCTGTATGAACTAATTNCTTTATGCTTATTTTCTGATTGCTGATTGAGTGTAATCCCACTAAGGATTCCAGTGATGAGATCGATGCAGGAGATAGTAGATTATGGTTTACTTAAATTGATGTAAGATGGCTTAAAAAGTAGCTGGCTGTAAATTTGTGGAATTTAACGTATGCAAACTTCTCTGTTAATTAGGTTTGGCTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00195	46669	55591	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000195s00012839.1	PF03790.8	KNOX1	31	73	4.20E-18
Glyur000195s00012839.1	PF03791.8	KNOX2	88	141	6.90E-18
Glyur000195s00012839.1	PF03789.8	ELK	196	217	7.50E-06
Glyur000195s00012839.1	PF05920.6	Homeobox_KN	236	275	2.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.109
SRR1783600	control	24.124
SRR1783602	moderate drought stress	32.645
SRR1811619	moderate drought stress	32.405

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.527
DRR006520	Root Summer glycyrrhizin high producing strain	21.125
DRR006521	Root Winter glycyrrhizin high producing strain	13.415
DRR006522	Root Winter glycyrrhizin high producing strain	13.094
DRR006523	Root Summer glycyrrhizin low producing strain	31.902
DRR006524	Root Summer glycyrrhizin low producing strain	31.853
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.827
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.901

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.250
SRR2868004	Drought Stress (root)	74.008
SRR2967015	Control (root)	74.329

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.875
SRR9715740	Leaf	106.483
SRR9715741	Leaf	67.068
SRR9715739	Root	7.225
SRR9715742	Root	20.672
SRR9715743	Root	18.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.361
SRR8749028	MeJA induced 9h	25.632
SRR8749029	MeJA induced 9h	10.083
SRR8749030	Uninduced	23.790
SRR8749031	Uninduced	6.756
SRR8749032	Uninduced	11.126

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.611
SRR8400027	Control - Root	33.204