Gene detail

Gene detail information of Glyur000195s00012832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22890.3	7.00E-133	PGR5-LIKE A
NR	XP_003525746.1	0	PREDICTED: PGR5-like protein 1A, chloroplastic-like [Glycine max]
Swissprot	tr\|Q8H112\|PGL1A_ARATH	3.00E-166	PGR5-like protein 1A, chloroplastic (Precursor)
trEMBL	tr\|I1K0F7\|I1K0F7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G03730.1}

Sequence

Transcript Sequence

>Glyur000195s00012832.1
CCAAGAACCAAACTTAGGAGAAAAATCTTATAACCAAACTTAGGAGAAAAATCTTATAAGGACTAAAGTCAAAAAAGTTAATATTTGTAGGGATCAAAAATATATTTAACCCAAAACCGGAAATGGCGGATTTCAATTCGACGCTTGAATCTTGATGGATGCTGACGCAGTTCACNCACAAGACAAGGCAGAAACATACGGGAAACGAAACAAAGTACCTAGGTTGCTATTGATCTGGATATTCTTTCTGAAATAATGAAAAGCACGAGTGGAGAAGGAAAGGAGAACAAGTCGTTGCAATTCCCTCCACACGTTTGTTGTAGCCTTATCTCTCTTTTTCCCTCCAAACAAAAATGANCCTGAAGTTCCCAAATGCACCCATAACCACAGCATCATCACCAATACCAATACAGTGTTAAGTAAGTGATTGTAATCACCATCATCATTCATCATGGCTAGCAAATTAGCCTTCACATTGACATGCAGGCCGCGTCCATTCGCTGCCTCTACACCCTTGATTCCAATCTCTTCTACTTCCAGAGTCCACCCTATTCAACTCAATGCCTCCCGCCACTTATGCCTTCGCCGCCGGCTATTTGTGTTTTCCCCCAAGGCCACCTCCGATCAACAAGGCAAGGTTGAGGAAGATGCTGTCGTTGATGGTAAAATATTACCTTATTGTAGCATTGACAAAAAAGAGAAGAAATCAGTTGGGGAACTTGAGCAAGAATTTCTTCAAGCACTCCAAGCATTCTATTATGAGGGAAAGGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAACTCATGTGGGAAGGGAGCAGCGTTGTAATGCTAAGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCATGAACGATAAAGAGTTTGACCAATTGAAACTGAGGCTAAAGATGGAAGGGAGTGAAATTGTGGCTGAGGGACCGCGGTGCAGTCTTCGTAGTCGAAAGGTTTACAGTGACTTGTCTGTTGATTATTTAAAGATGTTCCTGCTGAATGTCCCAGCAGCTGTGGTTGCATTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCTCATATCTGATAGAGATTCCAGAACCTTATAGTTTCATTTTGACTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGCTGGCTCAATCAATTACAAATGCAATTGTAAAAGATTTTTTGATTTTGAAGGGCCCCTGTCCTAATTGTGGTACTGAAAACACCTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGTGATTCTACAAACACTGTCAAATGTGAAAATTGNAGTACTGCCATGGTATATGATTCAACTACAAGATTAATTACATTGCCAGAGGGAAGTAACACCTAAGGGNAGTGTTATGGAAGTTAACNCATGGAGCTTCTACGGTGGGGTCTTCAACTGTGGTGATCTACCTCGATTCCAAACAGCCATTTATACTAAGTTCTCACATGCATATATATGTCACATCTAAATGTTTTGACCTCAGAACACTGGTCACATGATATCTCTGTTAAGAGTCTAATTTTGATACACAATTACACACCGGTCACTGGTGCTTGTAAAACCAGATCGCTCCCATNTGGCTTTCCCACATTCTGTCATTTTTATTCTCACTAACAACATTAACCAGACAAATACTTGTATGTCTATACTCTAGTTGAACTTGATAGCTGCATGTTCATCTTTTGAGCAATTCTAAAAGTGTTAGGATTGAAAGGGGCCCCCAGGGGGTGGCGTTTCTTGAATTTCATTAGTTCAAAGAGTTGACTTAGTTAGTGGATAAGTAGAACATTAAATACGAAAGTCAGCTATGGGAAACTTTATTGACTAAAAACTAACAAGCTTAAGTAGTCGTTACAATGACTAATGAGAATGGATTTTCTAATCGTTGCTCGGTGGAGGAAATGCACGTATATACAAACCTATGAAACTTGTGCGCACGTTTCTCACTANTAATAATAAAATTTAGTATGATCTTAATTATATTCCTTTATCTTTCATGGCTTAAGGCCGGATTGTAGATCAATCGNCCTTTTATGAACAAAAAATAAAAAGTGGTTGTTGATTTATCATAAGATCTCAGGACTAATTCTCTTGGCGCCAACAAGGTATCATTGCCCAACAATGTTGCTGCGAAACAAGAAGACAAAAGAACAATTAATGTTGACTTTGNAGAGATGAGAAACGCCATATGCCTAGCTATTATATTATATCTTCGTGGGGATCACGAAGGCTGCAACTTCTTATAATTAATCAATCAGCGACGTGATAACCGAATTGTACTTTATATATAAGGGGGACACATGTACTTGTCAATGAGCATCGTATATTGCATTAATTCCTTTGTACCCATAAAGATAGCTAACAGCTGTCCAAGACTTAATTAACCATGGCGTTGGCCTCNATTCTTCAAGCTTGTACCTTGATGTTGCTTGCTTATACAATGATGGGAGGAGAACCAGCAGTAGCTGTGGNAATATTTCGGCCCAGTAAATGGGCTCTCGCTCATGCCACCTTTTATGGAGATGAGACTGCTTCTGCCACCATGGGTATACATATATCTCAATTAATTACTTTATTTGCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00195	3695	10308	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000195s00012832.3	PF03330.13	DPBB_1	71	152	3.70E-20
Glyur000195s00012832.3	PF01357.16	Pollen_allerg_1	157	234	4.10E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.010
SRR1783600	control	0.010
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.030
DRR006520	Root Summer glycyrrhizin high producing strain	0.046
DRR006521	Root Winter glycyrrhizin high producing strain	0.031
DRR006522	Root Winter glycyrrhizin high producing strain	0.030
DRR006523	Root Summer glycyrrhizin low producing strain	0.030
DRR006524	Root Summer glycyrrhizin low producing strain	0.030
DRR006525	Leaf Summer glycyrrhizin high producing strain	107.032
DRR006526	Leaf Summer glycyrrhizin high producing strain	89.397

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.962
SRR2868004	Drought Stress (root)	4.512
SRR2967015	Control (root)	4.374

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.544
SRR9715740	Leaf	98.652
SRR9715741	Leaf	43.438
SRR9715739	Root	0.000
SRR9715742	Root	0.017
SRR9715743	Root	0.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.039
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.017
SRR8749030	Uninduced	0.027
SRR8749031	Uninduced	0.042
SRR8749032	Uninduced	0.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.180
SRR8400027	Control - Root	0.298