Gene detail

Gene detail information of Glyur000194s00016358.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56760.1	5.00E-126	serine acetyltransferase 1;1
NR	XP_004510733.1	0	PREDICTED: serine acetyltransferase 5-like [Cicer arietinum]
COG	YP_001980889.1	9.00E-95	serine acetyltransferase [Cellvibrio japonicus Ueda107]
Swissprot	tr\|Q42538\|SAT5_ARATH	1.00E-171	Serine acetyltransferase 5
trEMBL	tr\|A0A072TYU4\|A0A072TYU4_MEDTR	0	Serine acetyltransferase {ECO:0000313\|EMBL:KEH18715.1}

Sequence

Transcript Sequence

>Glyur000194s00016358.1
TGGCCACAGAATTTCTTAAAGCAAGCGGCCTTTGCCATTTTCCATCCACACCAAGGATAAGGAGATGTTGCGAATCACATGCTGTCTACTTGGACAATCTAAAACGACAGCGTATCCACGTGTCACTATTACAGTGACTGTCTCACCTCGCGTGAGGTTACCAAAGCACAACACAGTCCTGCCACTCCCCGCAATTGACCGAACAGCAATGCCGACGGGCGAACTCCGGTATGCATCGCCGCCGAAGGCGACGGCGAACTCCTCTGCCGTCGGGTACGAAGACGAGGGGTGGCTGTGGGCCCAGATCAAGGCGGAGGCACGGCGCGACGCCGAGTCGGAACCCGCGCTGGCGAGCTACCTGTACTCGACGATTCTCTCCCACTCGTCNCTGGAACGGTCGCTGTCGTTTCACCTAGGCAACAAGCTCTGTTCCTCCACCCTCCTCTCCACACTCCTCTACGACCTCTTCCTCAACGCCTTCTCCTCCGACCCCTCCCTTCGTTCCGCCGCCGTCGCCGACCTACGCGCCGCCCGCGAACGCGACCCCGCCTGCATCTCCTACTCCCACTGCCTCCTCAATTACAAGGGCTTCCTGGCCTGCCAGGCGCACCGTGTGGCACACCTGTTATGGCAGCAGGCGCGGCGGCCTTTAGCGCTGGCACTACATTCTCGTGTCGCTGATGTATTCGCGGTGGATATTCACCCGGCGGCGAGGATTGGGAAGGGGATTCTGTTTGACCATGCGACGGGGGTGGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCGATCCTGCACCATGTCACACTGGGTGGGACCGGGAAGGTTGGTGGGGACCGCCATCCCAAGATTGGGGATGGGGTGCTTATTGGTGCTGGTGCTACCATTCTGGGGAATGTTAAGATTGGGGAAGGTGCCAAGATCGGTGCTGGGTCAGTGGTTTTGATCGATGTGCCGCCTAGGACCACTGCCGTGGGGAACCCGGCGAGGTTGGTTGGTGGCAAGGAGAAGCCATCTCAGCATTTGGATGTGCCTGGGGAGTCCATGGACCATACTTCCTTCATCTCTGAGTGGTCAGATTATATAATTTGAATTTCCAAGTTGAATGCTTGACATCAAACACTTGATGTTGGAATTGCATGGCTTTAGAAGCTTATTTGCTTTTCCAATCTCGTGTTTTGCTGCTCTGATTTTGTAATTTTACATTTTTTGTGTACAATGGTGGCAATGAGGTTTGAACCTATGACCTCATGCTTAGTATCTAAACCTCTCACCATTAGCCCAATAGTGGCTTGACTAAACTGTGTTTAGAAGTGAACCTGTAATTTAAGTGTAATAATAAGGCTATGTTGATCACTNATATGATATGTAAATTTTGGTTACTGCTTACTATACTGCATTATGAGTGGAAATTTTGGCATCAAGCAATGTAGTAAGATACGGGTCAGAATACAGAAGCTAGTTTTGTTGATTATGTACTCAGTTTGAAGCACTGAGTTTGGGTTTCCAACATTGCATGTCCAAGGATTTATAATGGAGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00194	254418	256298	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00640	cysE	EC:2.3.1.30	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270
			Biofilm formation - Vibrio cholerae	map05111

Gene Ontology

biological_process
GO:0006535 cysteine biosynthetic process from serine

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0009001 serine O-acetyltransferase activity

GO:0016740 transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000194s00016358.1	PF06426.9	SATase_N	77	181	2.80E-38
Glyur000194s00016358.1	PF00132.19	Hexapep	261	294	1.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.713
SRR1783600	control	19.800
SRR1783602	moderate drought stress	27.794
SRR1811619	moderate drought stress	28.071

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.046
DRR006520	Root Summer glycyrrhizin high producing strain	19.837
DRR006521	Root Winter glycyrrhizin high producing strain	18.237
DRR006522	Root Winter glycyrrhizin high producing strain	18.041
DRR006523	Root Summer glycyrrhizin low producing strain	17.807
DRR006524	Root Summer glycyrrhizin low producing strain	18.357
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.167
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.656

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.410
SRR2868004	Drought Stress (root)	49.604
SRR2967015	Control (root)	48.535

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	76.044
SRR9715740	Leaf	83.048
SRR9715741	Leaf	64.688
SRR9715739	Root	106.951
SRR9715742	Root	41.394
SRR9715743	Root	51.766

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.342
SRR8749028	MeJA induced 9h	36.343
SRR8749029	MeJA induced 9h	16.454
SRR8749030	Uninduced	10.172
SRR8749031	Uninduced	4.519
SRR8749032	Uninduced	10.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.593
SRR8400027	Control - Root	41.057